Msep010707.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:236025527-236029872[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00043 0.58 14.7 0.6 2 23 151 173 150 173 0.96 2 19 0.00028 0.37 15.3 1.8 2 23 178 199 177 199 0.93 3 19 1.4e-05 0.019 19.4 0.3 3 23 209 229 208 229 0.96 4 19 0.00043 0.57 14.7 0.2 1 23 233 255 233 255 0.96 5 19 4.2e-05 0.055 17.9 0.2 2 23 279 300 278 300 0.95 6 19 3.7e-07 0.00049 24.3 1.5 1 23 305 327 305 327 0.94 7 19 7.5e-08 0.0001 26.5 0.4 1 23 333 355 333 355 0.98 8 19 2e-05 0.026 18.9 4.2 1 23 361 383 361 383 0.94 9 19 1.3e-05 0.017 19.5 0.8 1 23 389 411 389 411 0.95 10 19 1.3e-06 0.0017 22.6 0.3 1 23 417 439 417 439 0.97 11 19 2.4e-08 3.1e-05 28.1 2.9 1 23 445 467 445 467 0.98 12 19 7.6e-08 0.0001 26.5 0.4 1 23 473 495 473 495 0.98 13 19 2.3e-07 0.00031 25.0 0.1 1 23 501 523 501 523 0.97 14 19 1.2e-05 0.016 19.6 0.5 1 23 535 557 535 557 0.99 15 19 0.00023 0.31 15.6 0.9 1 23 574 596 574 596 0.98 16 19 1.7e-06 0.0022 22.3 0.5 1 23 602 624 602 624 0.99 17 19 3.8e-06 0.0051 21.2 3.9 1 20 630 649 630 652 0.94 18 19 0.00017 0.22 16.0 0.5 1 23 658 680 658 680 0.98 19 19 0.0012 1.6 13.3 0.6 2 23 687 708 686 708 0.95
Sequence Information
- Coding Sequence
- ATGCCATGCAACCCCTTCTCCCTTTTTTTAGGCAGAGAAAGAGAACGGTTAGGACCACCAGAGATGCCTAAATCCTACAAGGTCTGTGGCAACGCCGAACAAAGCCAAATTGAAAGGCATCCTGAACCTTTGGCACCACCTTCGTTTCTTCTGTCAGGACTACAGTTGTCCAGCCAGGAAGAAGCTTTGCGGGGTGTAAGCTTTGAAGCACTGAGTCATATAATGTCCTCAGCATGCCATCAAGGCACCAATCAGTTTGAATTGGTAACACACAATTATTCGCAAACTGAAACTCCACATCCACATCCTCCAAATCCAAGGCCATACGAAGAACCACAGTGTTCATATGTTAATCCAGAAAATAATAACAGTGAAAAGTCTACTGAAGAACAGCCTACAGCAGAAGCTGTATATAGTGATGATGAAGATAAAAATTCAGATGTAATTGTTATGTGCTCTGTTTGTAAGCTGAGTTTCACAAGTACAACAGATTTACTAATGCATCGTCGGAGTGTCCATCGAGGTCAGATCAGCTGTGAATTTTGTGGCAAAAATTTTGCAAACACTCATAATTTAAAAATCCATTCATATTCACATACTGGGGATCACAGAGCAAAATCATTCTGTCAAACCTGTGGGAAAGGTTTTGTGAAACCTTCTGACTTGCGTCGCCATGAATTAATACACTCAGAAAGATACTCTTGCTTGGAGTGTACTCTGACATTTATTAATcaagaagaattgagggaacacgGCAAAGCGCATACTGAATATGCACAGAATGATACAAAAAATATTCTGACAAATGATGGCACTCCACAGAATAAACCAATTGTCTGTGAAACTTGTGGTTTGACATTTGAGAGTAAATATGATCTGAAAGCCCATTCACTGAAACACACTGGTTCACAGCACTGTTGTCCTGTGTGTGGAAAGATATTCAGTCGTCCCTCTGATCTTAATCGGCATACAGTAATACACAGTGGAGAAAAACCATATACATGTAATATATGTGAAATGAGTTTCAGCAATTCAAGTAACTTGAGAATGCATATCATGATACATTCAGATATAAAGCCGCACCCTTGCACATTGTGTGATAAATCTTTTAGAAGGCTGTCTGATCTTGAACGGCATTCTTGCTTACACAGTGGTGCCAAACCGTTCTTATGTACTTTGTGTGGTATGGCGTTTACAACCAACTATAACCTGAAGATACATTCCATGAAACATTCTGGTGGCCTGCCTTATCCCTGTACACAGTGTGAAAAGGCCTTCAGTAAACCATCAGAATTGCAGAGACATAGTATGGTGCATTCAGGAGAAAGACCTTTCTCTTGCCATCAGTGTGGAATGACATTTTCAAATTCAAGCAACCTGAGAAACCACATGATAACCCACTCTGGCCGTCGCCCTTATCCTTGTACAATTTGTAAAAAAGCTTTCACAAGGCCTTCTGATGTTAAAAGACATATACTAACTCATACTGGTGCAAGACCATTTGCATGTGAAATTTGTGGTTTAGCTTTTGCAGATTCTTCTAATCTCAAAAAACACACCTTGACGCATTCAAAAAACGGCCAGTTTAATGGTGTACAAAATTATCGATGTAATTACtgtgacttaacctataataaccaagAAGAATTAGATGTGCACTTATCAACCCATGGTAGTAATATGCAGAAGGAATATTTATCAAAGGTAGGTACAAAAAATTACACTTGCGCTGTATGTGGCGTAAGATTTATTCATGCTATACATTTACAGGAACATTCATTGACACATGATCGTGAGCATTCTTTCCAGTGTGAAATATGTGATAAATCTTTTGCGCAGGAATTGTTTTTGCAAAGACATTTGTTGACACATACGGAGGCAAGGCCATATGAATGCCCTGAATGTTttaagtgtttcaaaagttcatcgCATTTGAAGAACCATATTCCAATACATTCCGGAATAAAACCATACTCTTGTGAAACATGCAACAAAGCATTTTTAAAAAATGCATCGCTTAGACGGCACCAAGCTATACACGCCCGAGGTAACTCTGTAACATGCAATGTATGTGGCAAAACTTTTCTTAACATGGAATACCTCAAGAAACATAGTGTAACACATAATGACTCGTAA
- Protein Sequence
- MPCNPFSLFLGRERERLGPPEMPKSYKVCGNAEQSQIERHPEPLAPPSFLLSGLQLSSQEEALRGVSFEALSHIMSSACHQGTNQFELVTHNYSQTETPHPHPPNPRPYEEPQCSYVNPENNNSEKSTEEQPTAEAVYSDDEDKNSDVIVMCSVCKLSFTSTTDLLMHRRSVHRGQISCEFCGKNFANTHNLKIHSYSHTGDHRAKSFCQTCGKGFVKPSDLRRHELIHSERYSCLECTLTFINQEELREHGKAHTEYAQNDTKNILTNDGTPQNKPIVCETCGLTFESKYDLKAHSLKHTGSQHCCPVCGKIFSRPSDLNRHTVIHSGEKPYTCNICEMSFSNSSNLRMHIMIHSDIKPHPCTLCDKSFRRLSDLERHSCLHSGAKPFLCTLCGMAFTTNYNLKIHSMKHSGGLPYPCTQCEKAFSKPSELQRHSMVHSGERPFSCHQCGMTFSNSSNLRNHMITHSGRRPYPCTICKKAFTRPSDVKRHILTHTGARPFACEICGLAFADSSNLKKHTLTHSKNGQFNGVQNYRCNYCDLTYNNQEELDVHLSTHGSNMQKEYLSKVGTKNYTCAVCGVRFIHAIHLQEHSLTHDREHSFQCEICDKSFAQELFLQRHLLTHTEARPYECPECFKCFKSSSHLKNHIPIHSGIKPYSCETCNKAFLKNASLRRHQAIHARGNSVTCNVCGKTFLNMEYLKKHSVTHNDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -