Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.7 8.5e+02 4.1 0.3 17 38 75 93 67 98 0.90

2 10 0.11 57 7.9 1.0 6 38 93 121 88 125 0.83

3 10 0.58 2.9e+02 5.6 0.9 15 38 129 149 123 153 0.91

4 10 0.018 9.1 10.4 0.3 16 40 158 179 150 182 0.89

5 10 0.0049 2.5 12.2 2.1 6 38 177 205 176 210 0.85

6 10 0.88 4.4e+02 5.0 0.2 15 38 213 233 207 237 0.90

7 10 0.053 26 8.9 0.9 14 39 240 262 228 266 0.75

8 10 0.018 9 10.4 1.4 15 38 269 289 261 291 0.86

9 10 0.14 71 7.6 0.1 15 40 297 319 290 321 0.90

10 10 0.08 40 8.4 0.3 15 38 325 345 319 347 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.7	8.5e+02	4.1	0.3	17	38	75	93	67	98	0.90
2	10	0.11	57	7.9	1.0	6	38	93	121	88	125	0.83
3	10	0.58	2.9e+02	5.6	0.9	15	38	129	149	123	153	0.91
4	10	0.018	9.1	10.4	0.3	16	40	158	179	150	182	0.89
5	10	0.0049	2.5	12.2	2.1	6	38	177	205	176	210	0.85
6	10	0.88	4.4e+02	5.0	0.2	15	38	213	233	207	237	0.90
7	10	0.053	26	8.9	0.9	14	39	240	262	228	266	0.75
8	10	0.018	9	10.4	1.4	15	38	269	289	261	291	0.86
9	10	0.14	71	7.6	0.1	15	40	297	319	290	321	0.90
10	10	0.08	40	8.4	0.3	15	38	325	345	319	347	0.88

Coding Sequence: ATGTTAATTTCGAACATACGTTCAGATATAAATGAAGAAATATGTTACAATAGGCGAACTAGTTCAGTTAAGCAGAGGGAACCTGAAACTTTGATTCAGCCGCACACATTAACAGAGAGGAATGCAGATCATAAGGATAGTACAAGAAACAAATTTGACAAAAATTTGGCCACTCTTAATCACTTGAGAGATAGGAAATTCAAACATAGTGGAATTAAAACGTATAAGTGTGATGTGTGTTATAAAACGTTTGCTTGGTCATCTAATTTGTCACAACATAAACAAATCCACAATAGAGTTAAAATGTATGAGTGTGATGTGTGTCTGAAAACCTTCACCCAGTCATCTAATTTGTCACAGCATAAACAAATCCACAGTGGAATTAAAAAGTATGAGTGTGATGTGTGTCTTAAAACCTTCACCCATTCATCTAATTTGTCACAACATAAACAAATCCACAGTGGAATTAAAATGGATAAGTGTGTTGTATGTCAGAAAACATTTACCCGGTCATCTGATTTGTCACGACATATGCAAATCCATAGTGAAATTAAAAAGTATGAGTGTGATTTGTGTCATAAAACCTTCACCCGGTCACCTAATTTGTCACGGCATAAACAAATCCACAGTGGAATAAAAAAGTATGAGTGTGATGTGTGTTATAAAACGTTTGCTTGGTCATCTAACTTGTCACAACATAAACAAATCCACAGTGGAATTAAAAAGTATAAGTGCGATGTATGTCAGAAAACATTTACCCGGTCATCTGATTTGTCAGGACATATGCAAATCCACAGTGGAATTAAAAAGTATGAGTGTGATGTGTGTCATAAAACCTTCACCCAGTCATCTAATTTGTCACAACATAAACAAATCCACAGTGGAATTAAAAAGTATAAGTGCGATGGATGTCCGAAAACCTTTACCCGCTCATCTGATTTGTCACGACATATACAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCATAAAACCTTCACCCAGTCACCTAATTTGTCACGGCATAAACAAATCCACAATGGAATTTAA
Protein Sequence: MLISNIRSDINEEICYNRRTSSVKQREPETLIQPHTLTERNADHKDSTRNKFDKNLATLNHLRDRKFKHSGIKTYKCDVCYKTFAWSSNLSQHKQIHNRVKMYECDVCLKTFTQSSNLSQHKQIHSGIKKYECDVCLKTFTHSSNLSQHKQIHSGIKMDKCVVCQKTFTRSSDLSRHMQIHSEIKKYECDLCHKTFTRSPNLSRHKQIHSGIKKYECDVCYKTFAWSSNLSQHKQIHSGIKKYKCDVCQKTFTRSSDLSGHMQIHSGIKKYECDVCHKTFTQSSNLSQHKQIHSGIKKYKCDGCPKTFTRSSDLSRHIQIHSGIKKYECDVCHKTFTQSPNLSRHKQIHNGI

Sequence clustering based on sequence similarity using MMseqs2