Msep045559.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:991135123-991135728[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-06 0.00032 24.4 0.0 20 42 4 26 1 29 0.84
Sequence Information
- Coding Sequence
- ATGGGAAGTTTTAAGGCTGCAAGAATTTATAATGTTCCTCAAACGACCCTAGAACGGTATGTGAAAGACGAGATGAAGAGTTCCACAGATGTTGTAAACACGAAGCTGGGAAGAAAACAATATATACCATCCGATCTCGCCGAACACTGCATTCTTTTGGAAGAACGCTATTTTGGTTTGTCACAAAAAGACCTACGTCGTTTAGCTTTTCAGTTGGCGGAGAAGAATGGAATCGCACATCCATTTTCGAAGAAGAGTGAATCAGCGGGGAGAAAATGGGTAAAGAACTTCTTGCGACGAAATCCGCAACTCGCCGTTCGATCGCCGCAGGGATTGTCTTTTGCTCGCGCAAAAAATTTCACGCTCGAGGcagtaacaaaattttttggcaTTTATGAGCCCGCTATGGATAAAATTAAACATCAACCTCACAGGATTTACAACTGTGACGAGACAGGAATAAGCATAGTGCAACATAAGCATACAAAGGTGATCGGCATGAAAGGTAAGCGCCAGATATCTGCCCTACAAGCAGCTGAAAGAGGCTGTCTCGTCACAGTTCTCACTTGTTTCAGTGCGGCAGGTCACTATGTTCCCCACTCATAA
- Protein Sequence
- MGSFKAARIYNVPQTTLERYVKDEMKSSTDVVNTKLGRKQYIPSDLAEHCILLEERYFGLSQKDLRRLAFQLAEKNGIAHPFSKKSESAGRKWVKNFLRRNPQLAVRSPQGLSFARAKNFTLEAVTKFFGIYEPAMDKIKHQPHRIYNCDETGISIVQHKHTKVIGMKGKRQISALQAAERGCLVTVLTCFSAAGHYVPHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943753; iTF_00943638; iTF_00943613; iTF_00943615;
- 90% Identity
- iTF_00943638; iTF_00943613;
- 80% Identity
- -