Msep213398.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068373.1:321966240-321966902[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-08 8.9e-06 29.3 0.0 1 36 15 50 15 57 0.92
Sequence Information
- Coding Sequence
- ATGCCGAGAACGTATCAAAGAAAAACTGAACGCCAGTCGTGGACACCGGACCAGCTAAATAACGCTTTAAAAGCTATAAAATATGGCAGTTCTATACGTAAAGCGGGAAGAGAATTTCATATTCCTGAATCTACACTGCGAGATAAACTGAAAGTTTCTGATGAGAAGTTAATGTGTCCAGCTTTAGGAAGAAAGCCAATTTTTAAAAAAGAAGACGAGGAAGAGCTCACGCAGCATGTAATCACAATGGCCAAACTGTTTTTTGGGCTGACCCCTATAGCACTTAGACGTATAGTGTACCAGTTTGCTACTCtaaaaaatatcaaacacaattttAATGACAGACTTAAACTTGCTGGTAAAGACTGGTTATACCTCTTTTTGAAGAGAAACCCAACCGTTAGCCTTCGTCAACCTGAAGGAACTAGTATCAACAGAATCAGTTCGTTCAATAGAGAAGAAGTAACACTTTTCTTCAGGAATCTGGAGACGGTATTTTCTAGGCAAAATTTCCCTCCTAACCGAATATACAATGTTGACGAATCTGGCATTTCAGTTGTTCAAAAAAAGTCAGCCAAAATATTCGCGAAGAAAGGAGAAAAACGAGTCGGTGCTCCCACATCAGCAGAGAGAGGAAAATATTACTATTGTCTGCTGCTTTAG
- Protein Sequence
- MPRTYQRKTERQSWTPDQLNNALKAIKYGSSIRKAGREFHIPESTLRDKLKVSDEKLMCPALGRKPIFKKEDEEELTQHVITMAKLFFGLTPIALRRIVYQFATLKNIKHNFNDRLKLAGKDWLYLFLKRNPTVSLRQPEGTSINRISSFNREEVTLFFRNLETVFSRQNFPPNRIYNVDESGISVVQKKSAKIFAKKGEKRVGAPTSAERGKYYYCLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944652; iTF_00944655;
- 90% Identity
- iTF_00944652; iTF_00944655; iTF_00945049;
- 80% Identity
- -