Msep265402.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068375.1:403173044-403173721[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-08 3.4e-06 30.7 0.0 5 40 19 54 18 56 0.94
Sequence Information
- Coding Sequence
- ATGGTGAGAGATTACAAAAGAAAGACGCAGAGGCAAGAGTGGTCGGCAGTTTCCATGCAAGAAGCTGTTCAAGCAGTAATAAATTGCTCAATGGGATACAAAAAGGCAGCTCTTCAGTTCAAAGTACCACAAACAACTTTAGAGCGCCACGTTAAGAAAAAAAGAGATGATCCAGAGCATTCTGTGAAGAAATCTATGGGACGTTTCACTTGTGTTTTTAATGAAGCACAAGAATCCGAGCTTGTGGACTATTTAACTAAAATGGAGGCTCAACTCTTCGGTCTTACTATCAATGAACTTCGTGACCTTGCTTTCCAGCTAGCAGAGCGAAATAAATTGAATCATCCATTTGGTGAGAATGGGAAAGCTGGTGTAGACTGGGCAAGAGGATTTTTAACTCGCCACCCTAATTTAAGCATAAGACGACCTGAGGCTACGTCTGCAGCTCGTGCGATGGGCTTCAATAAGGTTGCTGTAAAACAGTTCTTCAGCCATCTATCCTACGTAGTTGATACTTACCAGCTTACACCAGACGGgatttataactgtgatgaaacaggtCTAACTGTAAACCCTAAAGGGCATTCGAAGATAATAGCAAAAAGAGGCTGTAGACAGGTTGGCACAGTCACATCAGCCGAGAGGGGTCAAACTGTTACAGCTGAAATATGCTTTTAA
- Protein Sequence
- MVRDYKRKTQRQEWSAVSMQEAVQAVINCSMGYKKAALQFKVPQTTLERHVKKKRDDPEHSVKKSMGRFTCVFNEAQESELVDYLTKMEAQLFGLTINELRDLAFQLAERNKLNHPFGENGKAGVDWARGFLTRHPNLSIRRPEATSAARAMGFNKVAVKQFFSHLSYVVDTYQLTPDGIYNCDETGLTVNPKGHSKIIAKRGCRQVGTVTSAERGQTVTAEICF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943873;
- 90% Identity
- iTF_00944714; iTF_00944675; iTF_00944324; iTF_00943851; iTF_00943823; iTF_00943824; iTF_00943826; iTF_00943827; iTF_00943830; iTF_00943834; iTF_00944110;
- 80% Identity
- -