Msep012531.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:278386777-278387910[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-09 3.3e-07 33.9 0.0 1 40 29 68 29 71 0.93
Sequence Information
- Coding Sequence
- ATGAGTCAGgatCGCAAAAAAAGCTCATCCTCACTGGCGAGTCCTCAGGTAGGGATTCGGCGATATGGATGTAACAGCCGCCACACTCAAGATCAACTCAATGAAGCTCTGAGTAAAATAAAAGATGGATCTTTGGCCGTCAAGAGGGCTGCAGCGATCTATGGTATACCCAGAAATACATTAAAGAACAAATTAAGAGGTAACCACTCCAATGATGTAGGGCGTCCAAAAGTTTTTTCACATGACGAAGAAGTAACTTTCAAAGAGCATGTCATGAAGTTGAGTGACATAGGTTTGCCAATTACAATGACTGATCTTAGATTTATAGTAAAACAGTACTTGGACACCCAAAAGAGAAAAGCGCCTTGCTTCAAAAACAACCTACCTGGATGGGAATGGGGAGACAATTTCCTTAAAAGACACAAAGACCTGAAGGCAGTTTTTGGACAGAACATTTCTCGGGCTAGAGCCAAAGTTGACTCTGAAACTGTAAATAAATTCTTGGATAATCTTGAGAAGGAGTCAGACGTCCCTCCTCAATGTATTTATAACTTTGATGAAACCGGATTTCATGATGacccaaagaaaaaaaaaaacttttattcaGAAGAAAAATTAAACATCCTGAGATAA
- Protein Sequence
- MSQDRKKSSSSLASPQVGIRRYGCNSRHTQDQLNEALSKIKDGSLAVKRAAAIYGIPRNTLKNKLRGNHSNDVGRPKVFSHDEEVTFKEHVMKLSDIGLPITMTDLRFIVKQYLDTQKRKAPCFKNNLPGWEWGDNFLKRHKDLKAVFGQNISRARAKVDSETVNKFLDNLEKESDVPPQCIYNFDETGFHDDPKKKKNFYSEEKLNILR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944269; iTF_00944280; iTF_00944299; iTF_00944358; iTF_00944298; iTF_00944587; iTF_00944278; iTF_00944189; iTF_00944287; iTF_00944288; iTF_00944342;
- 90% Identity
- iTF_00944358; iTF_00944298; iTF_00944299; iTF_00944278; iTF_00944342; iTF_00944189; iTF_00944287; iTF_00944288; iTF_00944587;
- 80% Identity
- -