Msep208442.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068373.1:200131383-200131904[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-08 1.4e-05 28.7 0.0 3 38 12 47 10 52 0.92 2 2 2.6 4.2e+02 4.8 0.0 16 26 143 153 141 154 0.91
Sequence Information
- Coding Sequence
- ATGCCTCCAAAGAAGAGACGGTGCTGGGACACAGAAGCCATGAAAAAAGCCGTTAATGCAGTTCTTAAACAGGAAATGGGATATTTTAAAGCTGCTAAATGTTTCAGTGTTTGTCACACGACATTGGAGGACTATGTTAGAAAGTGTAAAAATAGTGACTTAGTTATAAATGATATTTTAACCCAGGCTATTGTCAGAAAACCAGTGCTTTCACACGACATTGAGAATGAACTCGCTTGTTACTGCCAAGTAATGGACGAAAGATATTACGGACTGAGGAGCAGTGACATAAGATCTATTGCTTTTCAGCTGGCATTACGAAACAGGTTGCCgaatgattttaataaaaatatgggTACAGCTAGAATGAAATGGCTCAGGGGTTTTTTAAAAGGTCATCCTGAGCTGACCTTCCGAAAACCAGAAAAACTCTCTGTAGCAAGAGCGGCACAGAAATTTGTACCTGTTAGAATTCTCTTCTCTTGCCAGTCTAGTAGAACTGGACTAGAAGATCAGTATTAG
- Protein Sequence
- MPPKKRRCWDTEAMKKAVNAVLKQEMGYFKAAKCFSVCHTTLEDYVRKCKNSDLVINDILTQAIVRKPVLSHDIENELACYCQVMDERYYGLRSSDIRSIAFQLALRNRLPNDFNKNMGTARMKWLRGFLKGHPELTFRKPEKLSVARAAQKFVPVRILFSCQSSRTGLEDQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -