Msep038652.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:847960104-847960547[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-09 4.8e-07 33.4 0.0 1 38 14 51 14 55 0.95
Sequence Information
- Coding Sequence
- atgcCGCGAAGTAAACAAGGAATAAAAAGGCCCAAAGTTTCAGAAGAAAATTTAACTAATGCTGTTAAAGCAGTTGAAGAAGATGGTATATCTGTTCGGTTGGCATCTAAGAAGTTCAGTGTTTCGCGAACAACACTCCAGAGACATTTAAGTGCTTTTGAACACTGTGGTGATAACACctttactgtaaaaaataaaaatgatatatggAGAGTATTCATGCTGGAAGAAGAAAAATGCTTAGTTAAATATTTAACTAAAGCCAGCAATATGCATTACAGTCTAACCAGACATGAGGTGATGGTCTTAGCCTATGAATTCGCTAAGTCCATAGGAAAGAAATATCCTAGTTCTTGGGATACTAATAAGCAAGCTGGTCTAAAATGGCTTACAGAGTTCATAAAAAAAACATCCTCTGTCACTTCGAAAACCCAGAGCTACTAG
- Protein Sequence
- MPRSKQGIKRPKVSEENLTNAVKAVEEDGISVRLASKKFSVSRTTLQRHLSAFEHCGDNTFTVKNKNDIWRVFMLEEEKCLVKYLTKASNMHYSLTRHEVMVLAYEFAKSIGKKYPSSWDTNKQAGLKWLTEFIKKTSSVTSKTQSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944686;
- 90% Identity
- iTF_00945043;
- 80% Identity
- -