Msep013445.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- cheC
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:297953051-297953781[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-10 7.9e-08 35.9 0.1 2 40 16 53 15 57 0.90
Sequence Information
- Coding Sequence
- ATGGGAAAAATTTATATAAGAAAAACCAATCGTCAGAATTGGTCCCATGAGGCTGCAAAAGAGGCAATTAGAGAAGTACAAAATGGAATATCCACCAATGCTGCCGCCAAACAGTATGGGATTCCTGAGGCCACGCTACGCCGATATATTAAAAATAACCCATACGAACTGCCAAAAAATGCGGGAAGTTTTAAATGTACATTCACAGAAGAGCAAGAACTTAAGCTTAAAGAATATGTGACTGAACTGGATAAAAGAGCGTTCGGAATCACGAGAAAGCAATTTGCTAGAATCGTCTATGACTTTGCTGAGGCTGAGAAAATTTCTCATAGGTTTAACAATGCAAAAAAGGAAGCCGGTAAGGATTTTATTACAGGTTTCATGGAAAAACATCACTTCTCTTGTAGAAAACCTGAGGCCACATCAGTGGCACGACTAATGGCATTTAACAAGACAAATGTGAAAGCATTCTTCCACATATATAAACAAGTAAGAGAAAAATACTGCTTTCAACctaatcaaatttataatgtggatGAAATCGGTTGTTCCACTGTACCCACTAAGACACCTTCAGTTCTCAGTCCCACAGGTGCGAGAAGAGTCATCAAATTTCTTCAGCTGAGAGAGGAATAA
- Protein Sequence
- MGKIYIRKTNRQNWSHEAAKEAIREVQNGISTNAAAKQYGIPEATLRRYIKNNPYELPKNAGSFKCTFTEEQELKLKEYVTELDKRAFGITRKQFARIVYDFAEAEKISHRFNNAKKEAGKDFITGFMEKHHFSCRKPEATSVARLMAFNKTNVKAFFHIYKQVREKYCFQPNQIYNVDEIGCSTVPTKTPSVLSPTGARRVIKFLQLREE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00945174;
- 90% Identity
- iTF_00945174;
- 80% Identity
- -