Msep239394.2
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- clz9_28
- Assembly
- GCA_034769895.1
- Location
- CM068374.1:325415087-325418346[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-08 1.1e-05 29.1 0.0 4 38 20 55 17 58 0.90 2 2 1.9 3.1e+02 5.2 0.0 1 43 472 513 472 515 0.87
Sequence Information
- Coding Sequence
- ATGAGAAGATATAAGCGTAAGCTGGGTGCTCGTCCCTACCGAAATTACACGGATAGTTCTCTAAATGAAGCGGTACAATTGGTCCTGACGAAAAAATTGTCTCTGAGGAAAGCATCTGAAAGATACAACATCCACATGAATACATTGTGGATGAAGACGAAAGAGGCGCGGCGCTTGACGGACAATCCAGCGAAAATCCCAGGTCGCCAACCTGTATTCACAGAGGAAGAAGAAAATAGGTTTGTGGCTCATGCAATTGCCTTGTCGTCGTTCGGTTTCCCAATAACAACCTTCGATCTACGTTGTGTGGAATGGGCACGGTCTTTCATGGAACGCCACAAACAAATTCTCTCTGCACGAATGTCCAAAAATATTACTTATGCAAGGGCCTCGACGGATCGAGAAGTAATTGACATGTATTTATCTAACTTGGAAAACGAACTGGAAGGTATCCCACCTGAGAACCAATGGAATTACGATGAAACAAACTTAGTGGACGATCCTGGAAGCAAAAAAGTTATCACGCGAAGAGGAGCGAAGTATCCTGAACAGATTCAAAATGCATCAAAGGCATGTACTTCGATTATGGTATGCGGTAACGCTGTGGGAGAACTGGCGCCCATTTATGTCAACTATAAATCCGAAAAATTGTGGTCCACATGGACTGAAAACGGACCGATGGGAGCAAGATACAATCGCACCAAATCAGGGTGGTTTGACCACCGAATTTTTGAGGACTGGTTTACATCACTTATGCTCCCTATCTTGAAAAAGCAAGACGGTACGAAAGCAATTACTGGTGACAACTTAAGCTTGCACTTAAGTCTAGAAGTCCTACGTCTTTGTGAAGAAAATGATATAAAGTTCATCGCGCTCCCGCCAAATTCGACCCACCTCCTCCAGCCGCTCGATGTGGCATTTTTCCGTCCTCTAAAATCCCACTGGAGAGACATATTGACGAACTGGAAAAAAACTACCTCTGGGAGCAGATGCATGAATCTGCCGAAGGATGAATTTCCACGTCTTCTTAAAGAACTGATAGCTGCCCTGGAACCGGATGCTAAAAATAATCTGAAGTCGGGATTTCGAAAGACAGGAATTTTTCCACTGGATAAGACCAAAGTTTTGCAGCGGCTTCCCAAAGCAGTCCTTGAAGAAAGCCTGGGGTTGATGATAGATCACGTGGGCGAAGTCTTCATAGAAGAATTAAACAAGAGGAGGGAAGTAACAAAAATCCGGGCCACCAGGGGACGCAAAAAGTTGAATGTCCCGCCGGGAAAAAGTATCGGTTTTGCCGACGTCCAAGAAGCCCACCAGCGAAGAGGCGACGAAATCCGCCGGAAGGGAAAATACACAGAGAAAGGCTTCAAAGTCCTCCTaaCATACAAACGGAAAACAGACCCTACTCCTATCACCGAAGAGTTATTAGAAAAAGCTAGGAATCTGATAAGTGAAGGCTTTTCACGTAGGCAGGCAGCTACTAAATTGCATTTAAAAGAATCCTCCCTTAGAAAACGATTAAAATTAGGTTACGGTGTAAACAAGCTGGGTAGATATAAAAACGTCTTTAACGAAGATCAAGAGAGGGAGATTCTCGATCACTGTGTGCAACTCGATTTGCGATTTTATGGACTGACGTTAAAAGCTCTACGTAATTTAGCTTTTGTTTATGCGGAATCCAACCACATCCCACACCGTTTCGATAAAGCAACAGCTGCAGCTGGGGTGGAATGGACTAGATCTTTTTTTATCACGTCACAATTTGTCGTTAAGGGAGCCAGAAAAAATAAGCGTTAG
- Protein Sequence
- MRRYKRKLGARPYRNYTDSSLNEAVQLVLTKKLSLRKASERYNIHMNTLWMKTKEARRLTDNPAKIPGRQPVFTEEEENRFVAHAIALSSFGFPITTFDLRCVEWARSFMERHKQILSARMSKNITYARASTDREVIDMYLSNLENELEGIPPENQWNYDETNLVDDPGSKKVITRRGAKYPEQIQNASKACTSIMVCGNAVGELAPIYVNYKSEKLWSTWTENGPMGARYNRTKSGWFDHRIFEDWFTSLMLPILKKQDGTKAITGDNLSLHLSLEVLRLCEENDIKFIALPPNSTHLLQPLDVAFFRPLKSHWRDILTNWKKTTSGSRCMNLPKDEFPRLLKELIAALEPDAKNNLKSGFRKTGIFPLDKTKVLQRLPKAVLEESLGLMIDHVGEVFIEELNKRREVTKIRATRGRKKLNVPPGKSIGFADVQEAHQRRGDEIRRKGKYTEKGFKVLLTYKRKTDPTPITEELLEKARNLISEGFSRRQAATKLHLKESSLRKRLKLGYGVNKLGRYKNVFNEDQEREILDHCVQLDLRFYGLTLKALRNLAFVYAESNHIPHRFDKATAAAGVEWTRSFFITSQFVVKGARKNKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944439;
- 90% Identity
- -
- 80% Identity
- -