Basic Information

Gene Symbol
-
Assembly
GCA_034769895.1
Location
CM068367.1:371407547-371408344[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.4e-10 7.1e-08 36.1 0.0 3 42 17 56 15 58 0.92

Sequence Information

Coding Sequence
ATGGTTCGTAATTATGAAAGAACTTCCACACAACAATCATGGTCGTCGACTTCAATGGAAGAAGCGATAAAGGCAGTGAAGAATGGTCAGATGGGTTATCTCAAGGCTAGTAAGACATTCAATGTTCCTAAAGCAACTCTGATTCGTCGTTGTAAAGATAAGTATAAACGTTTATCTGTTAATGAAAAAGGACTGGGTAGATATTCTCCTGTTTTTAATAAGGAGCAGGAAGCAGAATTAGTCAAGTATATTTTAGATATGGAGGCTCGACTTTTTGGAGTAACTCTGTTCGAACTGCGATCCTTGGAATTTCAGCTAGCTGAAAGAAATGCCATCAGTCATCCATTTGATAAAAATAAGAAGCTTGCTGGAGAGGACTGGGCATATGGCTTCAGAAAACGCCATCGTGAAATTTCATTGAGAAAACCTGAGTCAACATCTGCAGCAAGGGCCCAGGCTTTTAATTCTcaaaatgtaaaacaattttttgatcTCTTCAAAAGTATAATGGATAGTACAGGAATAAATACTAGTCGTATTTTTAACTGTGACGAAACAGGTTTAGGGACTGTCCCTAAAAGTAACAGCAAAATTGTAGCTAAAAAGGAACGAAAGCAGGTTGGGCGGCTGACTTCTGCTGATCGTAGCGGTACAACCACTGCAGTTATCTGTATGTCTTCCTCCGGTATTTACGTAACACCCATGGTTATTTTTGCTAGGAAAAGGATGAAGGTTGAACTTCAAGATGGTGCACCCCCTGGTACTGTTTTTGCGTGTAATGGTTTGAACATTTTTTGA
Protein Sequence
MVRNYERTSTQQSWSSTSMEEAIKAVKNGQMGYLKASKTFNVPKATLIRRCKDKYKRLSVNEKGLGRYSPVFNKEQEAELVKYILDMEARLFGVTLFELRSLEFQLAERNAISHPFDKNKKLAGEDWAYGFRKRHREISLRKPESTSAARAQAFNSQNVKQFFDLFKSIMDSTGINTSRIFNCDETGLGTVPKSNSKIVAKKERKQVGRLTSADRSGTTTAVICMSSSGIYVTPMVIFARKRMKVELQDGAPPGTVFACNGLNIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00944022;
90% Identity
iTF_00944793;
80% Identity
-