Basic Information

Gene Symbol
-
Assembly
GCA_034769895.1
Location
CM068374.1:357299277-357300197[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.4e-10 3.8e-08 36.9 0.0 5 39 19 53 18 56 0.94

Sequence Information

Coding Sequence
ATGGTGAGAGATTACAAAAGAAAGACGCAGAGGCAAGAGTGGTCGGCAGTTTCCATGCAAGAAGCTGTTCAAGCAGTAATAAATGGCTCAATGGGATACAAAAAGGCAGCTCTTCAGTTCAAAGTGCCACAAACAACTTTAGAGCGCCACATTAAGAAAAAAAGAGATGATCCAGAGCATTCTGTGAAGAAATCTATGGGACGTTTCACTTGTGTTTTTAATGAAGCACAAGAATCCGAGCTTGTGGATTATTTAACTAAAATGGAGGCTCAACTCTTCGGTCTTACTATCAATGAACTTCGTGACCTTGCTTTCCAGCTAGCAGAGCGAAATAAATTGAATCATCCATTTGGTGAGAATGGAAAAGCTGGTGTAGACTGGGCAAGAGGATTTTTAACTCGCCACCCTAATTTAAGCATAAGAAGACCTGAGGCTACATCTGCAGCTCATGCGATGGGCTTCAATAAGGTTGCTGTAAAACAGTTCTTCAGCCATCTATCCTACGTAGTTGACACTTACCAGCTTACACCAGACAGGATTTATAACTATGATGAAACAGGTCTAACTGTAAACCCTAAAGGGCATTCAAAGATAATAGCAAAAAGAGGCCATAGACAGGTTGGCACAGTCACATCAGCCGAGAGGGGTCAAACTGTTACAGCTGAAATATGCTTTTCAGCTGCTGGAACCTACATCGCTCCAATGCTAATTTTTCCTAGAAAACGGATGCAGCAGGAATTTGAGACCGGACTTCCCCCAAGTGCGACTTCACAGGTCCATGAAACAGGATGGATGACCAAAGaactttttttagtttggtttgaaAAGTTCATATCTTTTACAGGAGCAAAAAAAAGAGAAACCAATGCTACTACTCTTGGATGGGCATTCAACACACACGAAAAGTTTAGCACTAATTGA
Protein Sequence
MVRDYKRKTQRQEWSAVSMQEAVQAVINGSMGYKKAALQFKVPQTTLERHIKKKRDDPEHSVKKSMGRFTCVFNEAQESELVDYLTKMEAQLFGLTINELRDLAFQLAERNKLNHPFGENGKAGVDWARGFLTRHPNLSIRRPEATSAAHAMGFNKVAVKQFFSHLSYVVDTYQLTPDRIYNYDETGLTVNPKGHSKIIAKRGHRQVGTVTSAERGQTVTAEICFSAAGTYIAPMLIFPRKRMQQEFETGLPPSATSQVHETGWMTKELFLVWFEKFISFTGAKKRETNATTLGWAFNTHEKFSTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00943873;
90% Identity
iTF_00943894;
80% Identity
-