Msep137272.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068370.1:70716978-70717550[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-10 2.9e-08 37.3 0.0 1 44 18 62 18 63 0.91
Sequence Information
- Coding Sequence
- ATGTCAAGAACATATAAAAGGCAGCCTGGCTGTAGAAGGTATTGTGACTACAGTGaagaaaaacttaataaatgtctgGAAGCCATAAAAAGTAATGAAATGTCTCAGCGACAAGCAGCTGTGTTTTATGATATACCAAGAAGAACACTCATTAACAAactaaaaaatcataaaaatccaAGAAAGCCAGGATATCAGCAAATCTTTTCTAAAGAAGAGGAAGATATGTTTAAAAAATGCTTGATTGGTTGCTGTGATTTTGGTTTTCCATTGAGCACATTTGATTTAAGAATGATTGTAAAATCATATTTGGAAAAAACGGGCAGAACAGTAAAACAATTCAAGAACAATGTTCCAGGTAAAGAATGGGTCTTGTCATTTTTAAAACGTCATCCAGATCTTACTGGATCTAGATTTGCTGCAAATATTAAACAAAGCCGTACTGGAATTGATGCGCCAGTTCTTAAAGAGTACATTGACAATTTATCTGAAGTTGTAAAAGATGTTCCAGCATCCCACATATTTAATTACGATGAGTCTAACCTTACAGACGACCCTGGTAAAAAAAAGTAA
- Protein Sequence
- MSRTYKRQPGCRRYCDYSEEKLNKCLEAIKSNEMSQRQAAVFYDIPRRTLINKLKNHKNPRKPGYQQIFSKEEEDMFKKCLIGCCDFGFPLSTFDLRMIVKSYLEKTGRTVKQFKNNVPGKEWVLSFLKRHPDLTGSRFAANIKQSRTGIDAPVLKEYIDNLSEVVKDVPASHIFNYDESNLTDDPGKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943969; iTF_00943943; iTF_00944191;
- 90% Identity
- iTF_00943975;
- 80% Identity
- -