Msep296073.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- JAWRYS010001927.1:324961-326874[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.8 4.6e+02 4.7 0.0 27 44 40 57 16 58 0.83 2 18 5.4 8.7e+02 3.8 0.1 27 44 68 85 67 86 0.89 3 18 5.4 8.7e+02 3.8 0.1 27 44 96 113 95 114 0.89 4 18 5.4 8.7e+02 3.8 0.1 27 44 124 141 123 142 0.89 5 18 5.4 8.7e+02 3.8 0.1 27 44 152 169 151 170 0.89 6 18 5.4 8.7e+02 3.8 0.1 27 44 180 197 179 198 0.89 7 18 5.4 8.7e+02 3.8 0.1 27 44 236 253 235 254 0.89 8 18 5.4 8.7e+02 3.8 0.1 27 44 264 281 263 282 0.89 9 18 5.4 8.7e+02 3.8 0.1 27 44 292 309 291 310 0.89 10 18 5.4 8.7e+02 3.8 0.1 27 44 348 365 347 366 0.89 11 18 5.4 8.7e+02 3.8 0.1 27 44 376 393 375 394 0.89 12 18 5.4 8.7e+02 3.8 0.1 27 44 404 421 403 422 0.89 13 18 5.4 8.7e+02 3.8 0.1 27 44 432 449 431 450 0.89 14 18 5.4 8.7e+02 3.8 0.1 27 44 460 477 459 478 0.89 15 18 5.4 8.7e+02 3.8 0.1 27 44 488 505 487 506 0.89 16 18 5.4 8.7e+02 3.8 0.1 27 44 516 533 515 534 0.89 17 18 5.4 8.7e+02 3.8 0.1 27 44 544 561 543 562 0.89 18 18 5.4 8.7e+02 3.8 0.1 27 44 572 589 571 590 0.89
Sequence Information
- Coding Sequence
- ATGGTGCGTAATCGAGTAAGAAGTTCGCAGCGAACTACATGCAGTGAATCAACAATAAACGAAGCTCGAGAAAGAATTGGCAAAGGCGAATCTAAAAGGGAAGTTGCTGAATCGTTGGGAATGCCAGAATCTACACTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACACTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACACTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATCACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACACTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATCACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACACTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACACTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTAGGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACACTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATTACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTACGTAGATTTACCCGACAATCGTTGGGAATGCCAGAATCTACATCACGTCTGAGGCTTCAGCGAGGGTATACATCAAAGTCATTAGGTAGATTTACCCGACATTTTCTCTCCAAATGGAAACTGAATTTTCGAGCTACATAA
- Protein Sequence
- MVRNRVRSSQRTTCSESTINEARERIGKGESKREVAESLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTSRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTSRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLGRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTLRLRLQRGYTSKSLRRFTRQSLGMPESTSRLRLQRGYTSKSLGRFTRHFLSKWKLNFRAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -