Msep148613.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068370.1:335045952-335052278[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.017 2.7 11.8 0.1 2 38 324 359 323 361 0.81 2 2 5.2e-07 8.3e-05 26.2 0.0 1 30 411 440 411 440 0.95
Sequence Information
- Coding Sequence
- ATGAATAAAAGTGGTAGCAGTAGTAATGCCTCTTGTGCTGTTGCGCAGTGTCATAATCGTTGCTTTAAGGAACCTGGTACCATATACCACCGGTTTCCAAAAAGCGAAGAGCTGAGACGTGTGTGGCTTTCTCGCTGTAAACGAactgataaatttaatgttaatattGCCCGAGTGTGTTCTAAGCACTTTCTCccagaagattacgaaagggataTGAAAAATGAACTTCTTAGTTTACCGACAAGAAAAATTCTGCGGTTAAACGCTATTCCATCCCAGTACATTCCAAATTGGCATGGCAACTCAGATTCAAGCGAGATCACAACTCAGCTGTGTATGTCCTCAGTTTACATCGCCTACTACAACAACACTGAGACAAATCAGGACATACAAAAAGATATAGAAATAGCAAAACTTCGAgaagaaattttacagctaaaaAAGAAAAATGCCCTAAATCTACTCGCACTAAAACAAACGCAAGCTGCTCTAACAACACTCAAAAGAGCAAGATATGTAGCGTCTTTCAAGAAGACATTCCCGTGCAAAACAACACGGAGAACATTAAATCAAGACATAAAAGATATACTTTATAAGTGCTTCACTCCAGGCCAGATTCGATGTCTTTTACAAGACAAGAGGGTTAAGTGGTCATCAGAAGATATCGCGAATGCACTCACGATAAGAGCACTTTCAAAGAAGACCTACAATTACTTAAGAAAACGCAATTTCACCTTACCTGCTCGTTCTACTCTCCAAAAGTGGACACGACAGTTTAAATGCAGGCGAGGCATCCTTCGGGAAGTTTCGTCTTTAATGAAAGCTAAGGCTACAAAGTTTACAGAACTTGAGAGAATTTGTGTCATTTCTTTCGATGAAATGAATATTGATGgacgtgtgtgctacgattcatcagatgacATGCCACGGAATCCTATTCGGATCACTACCAAGACTGCTTGGATCGAGGATCAGCTGAAGGCAGCGATTGATTCTGTAAGAAATGGGGGAAAAATCCTAGCAGTTGGGCGCAAGTACGGTATACATGAAGCAACGTTAAGAAAGAGACTTAAGtGGTCACACTGTTTGAGGTTTTGGATTTTCAGTGTGTGGTTACTGTTAACATCCTATCAGCTTTGTTTGGAATTATCAGCAGGTCATTTAAACTTCAgGTATCATGCCACAAATTATATCAGAAAAGTTGGATCCAGACAATATCGGAACTTCACAGATGATCAGATGGAAAAGGCGCTTAAGGGTGTACAAGAAGAAGGTCTAGCTATCAGGAAAGCAGCTGAGAAGTATGGTGTCAGTAAGATTCTCTTCACCGCCGATTAA
- Protein Sequence
- MNKSGSSSNASCAVAQCHNRCFKEPGTIYHRFPKSEELRRVWLSRCKRTDKFNVNIARVCSKHFLPEDYERDMKNELLSLPTRKILRLNAIPSQYIPNWHGNSDSSEITTQLCMSSVYIAYYNNTETNQDIQKDIEIAKLREEILQLKKKNALNLLALKQTQAALTTLKRARYVASFKKTFPCKTTRRTLNQDIKDILYKCFTPGQIRCLLQDKRVKWSSEDIANALTIRALSKKTYNYLRKRNFTLPARSTLQKWTRQFKCRRGILREVSSLMKAKATKFTELERICVISFDEMNIDGRVCYDSSDDMPRNPIRITTKTAWIEDQLKAAIDSVRNGGKILAVGRKYGIHEATLRKRLKWSHCLRFWIFSVWLLLTSYQLCLELSAGHLNFRYHATNYIRKVGSRQYRNFTDDQMEKALKGVQEEGLAIRKAAEKYGVSKILFTAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00946212;
- 90% Identity
- iTF_00946212;
- 80% Identity
- iTF_00946212;