Msep239263.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068374.1:324079685-324082085[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0083 1.3 12.8 0.1 2 38 16 51 15 53 0.82 2 2 2.3e-07 3.8e-05 27.3 0.0 1 30 103 132 103 133 0.95
Sequence Information
- Coding Sequence
- ATGCCACGGAATCCTATTCGGATCACTACCAAGACTGCTTGGATCGAGGATCAGCTGAAGGCAGCGATTGATTCTGTAAGAAATGGGGGAAAAATCCTAGCAGTTGGGCGCAAGTACGGTATACATGAAGCAACGTTAAGAAAGAGACTTAAGtGGTCACACTGTTTGAGGTTTTGGATTTTCAGTGTGTGGTTACTGTTAACATCCTATCAGCTTTGTTTGGAATTATCAGCAGGTCATTTAAACTTCAgGTATCATGCCACAAATTATATCAGAAAAGTTGGATCCAGACAATATCGGAACTTCACAGATGATCAGATGGAAAAGGCGCTTAAGGGTGTACAAGAAGAAGGTCTAGCTATCAGGAAAGCAGCTGAGAAGTATGGTGTCAGTAAATATGGAAGACCAGCGGTTTTCAACGATGAAGACGAAAAATCTATTGTTGAGTGTTTCAAGCTTGCAGGGGAATGGGGTTTCCCCCTAACTAAACTAGATGTTCGTCTTGTAGTCAAGGGCTTCTTAGACCGTAAAGGATGCACAGAGCTTCGTTTTCAAAACAATATGCCTGGTCCAGATTGGGTTGAGTCATTTCTGAACAGAAACCAAGGGGATTTGACCCAGAggttgtgccaaaatataaaaagATCCAGAGCTAATGTTGACAATGACATTTTAAACAAATACTTTGATGAACTTCAGAAGACTTTAAAGGATGTTGACCCTAGTTTGATCGTAAATTACGATGAAACTAATATCACTGATGACCCACAGCGAAAAAAAAGTCCTTGTGAAACGTAA
- Protein Sequence
- MPRNPIRITTKTAWIEDQLKAAIDSVRNGGKILAVGRKYGIHEATLRKRLKWSHCLRFWIFSVWLLLTSYQLCLELSAGHLNFRYHATNYIRKVGSRQYRNFTDDQMEKALKGVQEEGLAIRKAAEKYGVSKYGRPAVFNDEDEKSIVECFKLAGEWGFPLTKLDVRLVVKGFLDRKGCTELRFQNNMPGPDWVESFLNRNQGDLTQRLCQNIKRSRANVDNDILNKYFDELQKTLKDVDPSLIVNYDETNITDDPQRKKSPCET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943604;
- 90% Identity
- iTF_00943604;
- 80% Identity
- -