Msep267560.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068376.1:14180133-14181902[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-13 8.6e-11 45.4 0.0 3 42 17 56 15 59 0.92
Sequence Information
- Coding Sequence
- ATGCCTAGGAATTATCAGTCCCGAGGTCTGAGGCAGCAGTGGTCTACAGAAGCAATGGAGCGTGCTGTGATGGCTGTAAGGAACGGTGACTGCTCACAAAATCACGCAGCCAAGGTATATGGTGTTCCCCGACAAACTCTTCGAAGATATTTGAGTACAGAAAACACAGATTCGAATGGAGGTCAGTCTTACAAATTAGGTCGCAAACCTGAATTAGGACAACGTGCAGAAGTCGTCCTAGTGAATCACATAAAGAAACTATCACGTCATGGATTTTCATTAACAAGAAATGATGTTCGGGCACTAGCCTTTAATTTAGCGGGAAGTCTTAACATTGATCACCGatttaatagagaagaagaattAGCCGGATGGTTATGGGGTTTTCTGAAACGACACCCTGGGCTATCTATCCGGAAAGAAGAGAACCTTTCACTTGCCCGTGCCCTTGGGATGAAGAGAGAAGTAGTTCATCGCTACTTTGATCTCCTGGAGAGGTTTATGGGAGACCTTAACTTAATGAATAGGGCTGACAGGATCTTTGGTCTTGATGAAAGTGGATTTCAGTTAAATACGCCGGCAAAAGAGGTTGTTGCTCCGAAAGGTGACCGTGTTGTACATGCTGTCGCACCAaaagaaaagggggaaacaatttCCATAATTGGATGTTTCAACGCAGCTGGAACCTATCTGCCACCTTGCCTAATAATCAAAGTTCTTGATGGCCATGACTCTCACTGCAGTAATCCAGAGGCTCTTGACTATGCTGAAGAAAATGGAGTCCACATGTTGTGCTTTCCTCCACATACAACAAACTGGCTCCAACCGGCAGATAAATCTTTTTTCGGACCGTTGAAGAAGGCCTACTACGACGCTGCAAGAAGATTTTTGAGGCTACACCGAAGAGCGTTCACAAAAGTAGAGTTTGGTGACCTGGTAAAGGAAGCTTGGGAAAAAGTAGCAACAATTGGACTTGCTGTAGGTGCATTTCGCGCTACTGGCCTTTGGCCACCAAGCCGGGATGCAATTCCTAGCCATGCGTACATCGCTGAAGGAGTGTCAGATCAAAGAACGCAATGTTCACCAAACACACTCAACGAGCATTTTTCTTTATCCACAGTAACAATTTCTGATGAAAACAGAGAGAGTTATTCAGGTCCATCCACATCAGGAACATCTAATAATTTGAACACCCGGCAACCAGTTTCACCAACGAGGAACGAGAATGGAGAAAAGGGCGACAAACTAACACCGAGGAAAATCATAAATAATCTGTCTCCGTTACCAGTTTCTTCAGGAAAAGACACCTTCAAACAGAGGAAAATCAAACCAGTTGTGCAGGGACTACTGAAAATGAAACTGTCTCTAGTTGACGATTGTATGTGTCCAATATGCGGAGGAAATTACAGCAATGACTGTAATGgagaaaaatggataaagtgtgaCACTTGTAATGAGTGGTCACATGAAGACTGCGTCAACGTGGAAGACGGTGAGACATTTCTATGTGACAATTGTCAATAA
- Protein Sequence
- MPRNYQSRGLRQQWSTEAMERAVMAVRNGDCSQNHAAKVYGVPRQTLRRYLSTENTDSNGGQSYKLGRKPELGQRAEVVLVNHIKKLSRHGFSLTRNDVRALAFNLAGSLNIDHRFNREEELAGWLWGFLKRHPGLSIRKEENLSLARALGMKREVVHRYFDLLERFMGDLNLMNRADRIFGLDESGFQLNTPAKEVVAPKGDRVVHAVAPKEKGETISIIGCFNAAGTYLPPCLIIKVLDGHDSHCSNPEALDYAEENGVHMLCFPPHTTNWLQPADKSFFGPLKKAYYDAARRFLRLHRRAFTKVEFGDLVKEAWEKVATIGLAVGAFRATGLWPPSRDAIPSHAYIAEGVSDQRTQCSPNTLNEHFSLSTVTISDENRESYSGPSTSGTSNNLNTRQPVSPTRNENGEKGDKLTPRKIINNLSPLPVSSGKDTFKQRKIKPVVQGLLKMKLSLVDDCMCPICGGNYSNDCNGEKWIKCDTCNEWSHEDCVNVEDGETFLCDNCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943661;
- 90% Identity
- -
- 80% Identity
- -