Msep058429.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:1266977439-1266987199[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-07 9.2e-05 26.1 0.0 1 38 10 47 10 50 0.95 2 2 5.7e-07 9.2e-05 26.1 0.0 1 38 78 115 78 118 0.95
Sequence Information
- Coding Sequence
- ATGCCTCCAAAGAAGAGACGGTGCTGGGACCCAGAAGCCATGAAAAAAGCCGTTAATGCAGTGCTTAAAAAGGAGATGGGAAATTTTAAATCTGCTAAATGTTTCAGCGTTTCTCAAACGACATTGGAGGACTATGTTAGAAAGTGTAAAAATATTGACTTAGGTATAAATGATATTGGCACGACATTGAGAATGAACTCGCTCATGCCTCCAAAGAAGAGACGGTGCTGGGACCCAGAAGCCATGAAAAAAGCCGTTAATGCAGTGCTTAAAAAGGAGATGGGAAATTTTAAATCTGCTAAATGTTTCAGCGTTTCTCAAACGACATTGGAGGACTATGTTAGAAAGTGTAAAAATATTGACTTAGGTATAAATGATATTGGCACGACATTGAGAATGAACTCGCTCCTGGCATTACGAAACAGGTTGCCGaaagatattaataaaaatataggtACAGCTGGAAAGAAATGGCTGAAGGTTTTTTTAAAACGTCATCCTAAGCTGACCTTCCGAAAACCAGAAAAACTCTCTGTAGCAAGAGCGAAAGGTTTCACCAAGGAAAAGTTCGACTCTTTCTTCAAACTTCTGAAAGATGAAGCAAAAACCATGGATATTCCTCTACATAAAATCTACAACTGCGATGAAACGGGAATCTCAGTCGTGCAGGaTCGTGCTCAGGAAAAAAGGGTCAGAATAGTTTGTCTGCCACCTCATACAACATATCCCTTACAACCTTTAGATGTGTCGTTCATGACTCCGTTTAAAAGTTACTATTCTAGAGAGGTTGAAAACTGGCTTTCCCATCACCCTTTTCAGTGTCTGAAAGATAAAGATGTGGGACCGTTGATGGGGCGAGCGTATTCTAGAGCTGCTACCCACGAAGTAGCAGTTAATGGTTTCAGAAAATGTGGGATCTACCCACTCTATCCATTGATTTCTCCACCGGACGCCTTTCCTGTTGAAGAGATGACCGATAGGTCTACTACGTCTCCTTCCCCAGAAAGAACAGTGTGGCTGGATTTATTTCTCCTTTTGAAGTCAGTCCACCACCTCTGCTCCCACCTCCTAAAACCACATCAAGGTCAGGAATGGCAGCTCTTCTGA
- Protein Sequence
- MPPKKRRCWDPEAMKKAVNAVLKKEMGNFKSAKCFSVSQTTLEDYVRKCKNIDLGINDIGTTLRMNSLMPPKKRRCWDPEAMKKAVNAVLKKEMGNFKSAKCFSVSQTTLEDYVRKCKNIDLGINDIGTTLRMNSLLALRNRLPKDINKNIGTAGKKWLKVFLKRHPKLTFRKPEKLSVARAKGFTKEKFDSFFKLLKDEAKTMDIPLHKIYNCDETGISVVQDRAQEKRVRIVCLPPHTTYPLQPLDVSFMTPFKSYYSREVENWLSHHPFQCLKDKDVGPLMGRAYSRAATHEVAVNGFRKCGIYPLYPLISPPDAFPVEEMTDRSTTSPSPERTVWLDLFLLLKSVHHLCSHLLKPHQGQEWQLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944967;
- 90% Identity
- -
- 80% Identity
- -