Msep099929.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068368.1:749620830-749625264[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-12 2.4e-10 43.9 0.1 1 39 18 56 18 60 0.90 2 2 1.4e-05 0.0023 21.6 0.1 1 24 121 144 121 145 0.95
Sequence Information
- Coding Sequence
- ATGCCTCGAGAATACTTTAGAAAACTTGGGTATCTTTCCTATCGCAATTACACCGAGGAATCATTAGAGAAAGCAGTCGAATCTGTAATAAACCACAGTTTATCAATAAGGAAAGCTGCAGAAAAaTACGGAATTGCTAAAAACACGATTGTGAACCACATCAATAAAAGGAAAATTGGTGACCGAGTGAGAAGCCCTGGTGGACAGGAGATTTTCACTATGGAAGAGGAGGCGATCATGGTCGCTCATATTGTGGCTACATCCACTTATGGGTTCCCAGTGACTGTGATGGATTTGAAGATCGAGATTATGCCTCGAGAATACTTTAGAAAACTTGGGTATCTTTCCTATCGCAATTACACCGAGGAATCATTAGAGAAAGCAGTCGAATCTGTAATAAACCACAGTTTATCAATAAGGAAAGCTGCAGAAAAGTGA
- Protein Sequence
- MPREYFRKLGYLSYRNYTEESLEKAVESVINHSLSIRKAAEKYGIAKNTIVNHINKRKIGDRVRSPGGQEIFTMEEEAIMVAHIVATSTYGFPVTVMDLKIEIMPREYFRKLGYLSYRNYTEESLEKAVESVINHSLSIRKAAEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944076; iTF_00943641;
- 90% Identity
- -
- 80% Identity
- -