Basic Information

Insect: Magicicada septendecula
Gene Symbol: -
Assembly: GCA_034769895.1
Location: CM068368.1:44260328-44262091[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00028 0.045 17.5 0.0 4 38 28 62 26 67 0.89

2 6 4.4e-05 0.007 20.1 0.0 4 38 126 160 124 165 0.89

3 6 0.00037 0.059 17.1 0.0 4 38 224 258 222 263 0.90

4 6 0.00028 0.046 17.5 0.0 4 38 322 356 320 361 0.89

5 6 0.00033 0.054 17.2 0.0 4 38 420 454 418 459 0.89

6 6 0.00033 0.054 17.2 0.0 4 38 518 552 516 557 0.89

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00028	0.045	17.5	4	38	28	62	26	67	0.89
2	6	4.4e-05	0.007	20.1	4	38	126	160	124	165	0.89
3	6	0.00037	0.059	17.1	4	38	224	258	222	263	0.90
4	6	0.00028	0.046	17.5	4	38	322	356	320	361	0.89
5	6	0.00033	0.054	17.2	4	38	420	454	418	459	0.89
6	6	0.00033	0.054	17.2	4	38	518	552	516	557	0.89

Sequence Information

Coding Sequence: ATGGAAAACCAACCACACAAGGAATCTACAACTCTGAAAAGTAAAAGACAAGTAAAAATATATCGACATTATAGTATGGGCAGTATGATTGAAGCTGCAAGACTGGTTGAACAAAACAATACCAGTATATATAAAGCAGCAAAGATTACTGGGGTTCCATGGTCCACGCTTAAGCGATACGTATCCGACAATGATTCTGTAGCAGATTCAAAATCATTGAGAAAACTGGGTAGACCATTCGCATTAGGTGTAGAACAGGATGTATGTTTCCTTGATTTTCAGAAGCACGGCAACATGGAAAACCAGCCAAACAAGGAACGTACAACTCCAAAACGTAACATACGAGCAAAAGTGCATCGAAGTTATAGTGTGGGTAAGATGGTTGAAGCTGTAAGACTGGTTAAACAAAACAATACCAGTATATATAAAGCAGCAAAGATTACTGGGGTTCCATGGTCCACGCTTAAGCGATACGTATCTGACAATGATTCTGTAGCAGATTCAAAATCATTGAGAAAACTGGGTAGGCCATTCGCATTAGGTGTAGAACAGGATGGATGTTTCCTTGATTTTCAGAAGCACGGCAACATGGAAAACCAACCAAACAAGGAACATACAACTCCAAAACGTAACAGACGAGCAAAAGTGCATCGAAGTTATAGTGTGGGTAAGATGGTTGAAGCTGCAAGACTGGTTAAACAAAACAATACCAGTATATATAAAGCAGCAAAGATTACTGGGGTTCCATGGTCCACGCTTAAGCGATACATATCCGACAGTGATTCTGTAGCAGATTCAAAATCATTGAGAAAACTGGGTAGGCCATTCGCATTAGATGTAGAACAGGATGGATGTTTCCTTGATTTTCAGAAGCACGGCAACGTGGAAAACCAACCACACAAGGAACGTACAACTCCAAAACGTAACATACGAGCAAAAGTGCATCGAAGTTATAGTGTGGGTAAGCTGATTGAAGCTGCAAGACTGGTTAAACAAAACAATACCAGTATATATAAAGCAGCAAAGATTACTGGGGTTCCATGGTCCACGCTTAAGCGATACGTATCCGACAATGATTCTGTAGCAGATTCAAAATCATTGAGAAAACTGGGTAGGCCATTCGCATTAGGTGTAGAACAGGATGTATGTTTCCTTGATTTTCAGAAGCACGGCAACGTGGAAAACCAACCAAACAAGGAACGTACAACTCCTAAACGTAACATACGAGCAAAAGTGCATCGAAGTTATAGTGTGGGTAAGCTGGTTGAAGCTGCAAGACTGGTTAAACAAAACAATACCAGTATATATAAAGCAGCAAAGATCACTGGGGTTCCATGGTCCACGCTTAAGCGATACGTATCCGACAATGATTCTGTAGCAGATTCAAAATCATTGAGAAAACTGGGTAGGCCATTCGCATTAGGTGTAGAACAGGATGGATCTTTCCTTGATTTTCAGAAACACGGCAACATGGAAAATCAACCAAACAAGGAACGTACAACTCCAAAACGTAACATACGAGCAAAAGTGCATCGAAGTTATAGTGTGGGTAAGCTGGTCGAAGCTGCAAGACTGGTTAAACAAAACAATACCAGTATATATAAAGCAGCAAAGATTACTGGGGTTCCATGGTCCACGCTTAAGCGGTATGTATCCGACAATGATTCTGTAGCAGATTCAAAATCATTGAGAAAACTGGGTAGGCCGTTTGCATTAGATGTAGAACAGGAACGTAAAATTTGTAACTACATACTAAAAATATAG
Protein Sequence: MENQPHKESTTLKSKRQVKIYRHYSMGSMIEAARLVEQNNTSIYKAAKITGVPWSTLKRYVSDNDSVADSKSLRKLGRPFALGVEQDVCFLDFQKHGNMENQPNKERTTPKRNIRAKVHRSYSVGKMVEAVRLVKQNNTSIYKAAKITGVPWSTLKRYVSDNDSVADSKSLRKLGRPFALGVEQDGCFLDFQKHGNMENQPNKEHTTPKRNRRAKVHRSYSVGKMVEAARLVKQNNTSIYKAAKITGVPWSTLKRYISDSDSVADSKSLRKLGRPFALDVEQDGCFLDFQKHGNVENQPHKERTTPKRNIRAKVHRSYSVGKLIEAARLVKQNNTSIYKAAKITGVPWSTLKRYVSDNDSVADSKSLRKLGRPFALGVEQDVCFLDFQKHGNVENQPNKERTTPKRNIRAKVHRSYSVGKLVEAARLVKQNNTSIYKAAKITGVPWSTLKRYVSDNDSVADSKSLRKLGRPFALGVEQDGSFLDFQKHGNMENQPNKERTTPKRNIRAKVHRSYSVGKLVEAARLVKQNNTSIYKAAKITGVPWSTLKRYVSDNDSVADSKSLRKLGRPFALDVEQERKICNYILKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -