Mleu001039.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000001.1:24295104-24307110[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.1 91 4.6 6.9 1 23 538 561 538 561 0.96 2 9 0.0035 0.29 12.4 1.2 1 23 566 590 566 590 0.90 3 9 5.7e-05 0.0047 18.1 0.3 2 21 641 660 640 661 0.96 4 9 7.8e-05 0.0065 17.6 0.5 1 23 717 738 717 738 0.98 5 9 8.3e-05 0.0069 17.5 0.3 1 23 744 767 744 767 0.95 6 9 6.5e-05 0.0054 17.9 0.4 2 20 786 804 785 806 0.92 7 9 0.01 0.87 10.9 1.4 2 23 813 836 813 836 0.96 8 9 0.024 2 9.8 2.7 2 20 844 862 843 865 0.96 9 9 0.0021 0.17 13.1 1.8 1 21 871 891 871 896 0.92
Sequence Information
- Coding Sequence
- ATGCTGTCGCCGCGCGATGACGACGACGATGACAGCCATCTCTGCATCAAATGCAACGCTACCATCGTTGGCTTGGACAACTACGTGAAGCACAGGAAACAGAGATGCGGCAAATCTAAAGAACCAAAAGTATTACCACCAATAGACACACTTGAACCCACTTATAGCCTTGGCGCAGACGTATTCTTCCAATCTCTTGAATTACAGAGTAGCGTCAAGAAATCTTCGCTATCACGATTAACGCCACCGACACCGATAACAAAGACTGTTATAGAGAGAAAAAATATACTCAATCCGCCTTCTACCTCCAGAGAATTGCCACGAATAAGTCCATTAGAAACAAATTTAAGGGGAGAAGACTGGATAGGTGGGCACAGCTTACGAATAGGTAGCAACGAAGACAATCAAACGAAATTAATCAATGCTGTGGCGAGTATAAGTGGTGCTGTGAAGAAAGACACGCCGAGTTCCTCTTACAGCATTGCACCTTACAATGATTATAAGCCTGACGAGGACTCCGATGAGTCTGAAGTCACTGAAGATGAAGAGGAGGAGGATACACCGCATGCGAAATGGAAACCTCCTCCTCATtacaccggaggcaaatggagACCTGCATCCCCTGAACACGAAGACTGGGATATGAGAGATGAGGAACATACAGGTGGCAAGTGGAAACCGCTCATAATACACGACAGTAATGATAGGGACGAAGACTATGACGCACCTCCACCGGATCATACAAAAGGGAAATGGGTCCCAGGAGCGCATGAAAAGACTCAGATAATGCAAACAACAATACAAAACAAAGGTTCGGTTCAGTATTGGTGCGGCCCTTGCAACAGACGATTAGGTTCCCGAGCTATTTACGACAAGCATTTAATGTCTAACTTACATATGCGCAAAGTGCTACCGGAGCATGAATTGGAATTCTCGGGGCATTTGGATCCTATCAGACCAATTGTGGATAAGCGAACAACTCGACCTTCACTATTCGTTAATGACAGCATTTATTCTCAGGCGCAACGGAAGAGACAAAAGACAGAacctaaattaaatattaaaatacaaagaaagaaaagaaaccGGAAACCTTTCTTTGTACAATGCGCCGGTTGTAAAACGAGAGTTCGCTTACATCTAATGGGGAAACACCTCATTTCACACTACCATTTCAGAAAAGCGACTGGCATTAAAAGTGAAGTATACCAGCAATTAATTCTTGATAATATCGACGCTATTGTTCACCAGGCACCTTTTCAGTGTAGTCCTTGTAAATTTTACACGAACTGGCTCTCAAATTTCATGCAGCATTGGTTCACTGAGGAGCACgaacaaaaaatatcatcaatGGACGGAAGATACTGGTGTTCTTTTTGCAAATTCGAATGCGACAAATCTCAGGAAATGATGGATCATATGACAAGTACTGATCACAGTGACGTCGTAGCGGTTATAAGCCGATCAATGCCGATCATAATAAGAAAGAAAACAACCCTTCATTGCGAGACTTGCCTCGAGGAATTCAGATATAATGTGGAAATTAAGAAACATTGCCAAAAAACTGGTCATGAATTAGCACACACTGCAACCGATTTCTATCAAGAACTGCACAAGTGTCAATATTgtaaacagaaatttaaatgttCATTAACGCTAGCCGCTCATTTAAAATCTAAGCATAACCAAAAAGCTTTCTTTTGTCTAGTCTGCTCTAAGACGTTCAAGACCTCAGAGGAAGCTAAACAACATCGTCAAAAGGCGGAACATAGAATCAAGAGGAAAGAGAGTTCGTTGCAACGCAACTCATTAACTAAACCACTTGCCAGAAAATGTCCATACTGCTCTGAAGATGtgatattaaaaaacatattgaaaCTTAAAGATCACATCCGAACAGTACATCCTAATATTAGAAAAAAaTGTCCAAAATGTGGGAAATCATTCATTTTCTCGCAAGAAGTGACGCGTCATATCAGAGACAACGCTTGTGAATTCCAGTCACCGGCTCCTAGCTCCTCAATCCTCTGGCATTGCAGCCAATGCCTCTTTAGAACAGATTCTCAAGCAGAATGTTTCTTCCACGAAATCCTACACACAAATCCATTGCAGATAGCAAAAGCCGGACCCTCGAAAGTCATCCCGAAATACCCGTGTCCTATTTGCTCCAAGATTTTCAAAAAGGCTTCGTTACGACAACATTTGAGACAGCACACTTTCGAAAGGCCCTTTGTTTGTTCAATCTGTGGAGCGAACTTTACGAGACAAAACAGTCTAGCGAATCATTCGAAGAATGAACATAGAAGCGATGGTGCGACTGTTGCACTGGAAACCGTCGTTACAACAGAAGAAATATATTGCGATAAGTGTGGAAAGAAATTCCCAAACAGAAGCAGCTTGTCTAAACACGAGGCAAAGTGTGACGGCGAAGGTCGCAAGTGCACGCACGAGGGGTGCGGGTTCATCGCCACATCCTCTGCGCAACTCTACAGACATCGCCGTACTCATGGTATAGAGGTTAGGATAAACCAGTGCACAATATGCGAATTCAGTACTCCTCAAGCGAGCCACATGCGTCGGCACATGGTGTGCCACGAGGGAGTCAAGCCGTACGCGTGTCCGCACTGCGATTTCACTTGTGGGAGCCTGGAAAACCTCCGCAAGCACGTGCTCCGTTCTGGCCGACACCCCGGTCTGTTCCTGTACCAATGCCGGGAGTCAGGCTGCACCTTCCGTAGTGACACAGCGCGGCGCATACGCGAGCACTTGGCGACTGAGCACTCAAACATATACGATGCGCGGGCCGCCATCGACTGTGTTAAAACTCTGCTTTTGAAAAAGAATTGA
- Protein Sequence
- MLSPRDDDDDDSHLCIKCNATIVGLDNYVKHRKQRCGKSKEPKVLPPIDTLEPTYSLGADVFFQSLELQSSVKKSSLSRLTPPTPITKTVIERKNILNPPSTSRELPRISPLETNLRGEDWIGGHSLRIGSNEDNQTKLINAVASISGAVKKDTPSSSYSIAPYNDYKPDEDSDESEVTEDEEEEDTPHAKWKPPPHYTGGKWRPASPEHEDWDMRDEEHTGGKWKPLIIHDSNDRDEDYDAPPPDHTKGKWVPGAHEKTQIMQTTIQNKGSVQYWCGPCNRRLGSRAIYDKHLMSNLHMRKVLPEHELEFSGHLDPIRPIVDKRTTRPSLFVNDSIYSQAQRKRQKTEPKLNIKIQRKKRNRKPFFVQCAGCKTRVRLHLMGKHLISHYHFRKATGIKSEVYQQLILDNIDAIVHQAPFQCSPCKFYTNWLSNFMQHWFTEEHEQKISSMDGRYWCSFCKFECDKSQEMMDHMTSTDHSDVVAVISRSMPIIIRKKTTLHCETCLEEFRYNVEIKKHCQKTGHELAHTATDFYQELHKCQYCKQKFKCSLTLAAHLKSKHNQKAFFCLVCSKTFKTSEEAKQHRQKAEHRIKRKESSLQRNSLTKPLARKCPYCSEDVILKNILKLKDHIRTVHPNIRKKCPKCGKSFIFSQEVTRHIRDNACEFQSPAPSSSILWHCSQCLFRTDSQAECFFHEILHTNPLQIAKAGPSKVIPKYPCPICSKIFKKASLRQHLRQHTFERPFVCSICGANFTRQNSLANHSKNEHRSDGATVALETVVTTEEIYCDKCGKKFPNRSSLSKHEAKCDGEGRKCTHEGCGFIATSSAQLYRHRRTHGIEVRINQCTICEFSTPQASHMRRHMVCHEGVKPYACPHCDFTCGSLENLRKHVLRSGRHPGLFLYQCRESGCTFRSDTARRIREHLATEHSNIYDARAAIDCVKTLLLKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -