Mleu004831.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000006.1:244141-255527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.97 81 4.7 0.2 2 23 302 322 301 322 0.93 2 15 0.012 1 10.7 1.2 1 19 330 348 330 351 0.94 3 15 0.012 1 10.7 1.2 1 19 375 393 375 396 0.94 4 15 0.012 1 10.7 1.2 1 19 420 438 420 441 0.94 5 15 0.012 1 10.7 1.2 1 19 535 553 535 556 0.94 6 15 0.012 1 10.7 1.2 1 19 650 668 650 671 0.94 7 15 0.012 1 10.7 1.2 1 19 765 783 765 786 0.94 8 15 0.012 1 10.7 1.2 1 19 880 898 880 901 0.94 9 15 0.0045 0.38 12.1 4.8 1 23 925 947 925 947 0.98 10 15 0.59 49 5.4 0.2 1 23 966 989 966 989 0.93 11 15 0.00013 0.011 17.0 1.1 2 23 1000 1021 999 1021 0.96 12 15 0.00078 0.065 14.5 1.2 1 23 1027 1049 1027 1049 0.95 13 15 0.00015 0.013 16.7 2.3 2 23 1056 1077 1056 1077 0.97 14 15 7.2e-06 0.0006 20.9 2.9 1 23 1083 1105 1083 1105 0.97 15 15 0.0036 0.3 12.4 0.0 1 22 1111 1132 1111 1132 0.96
Sequence Information
- Coding Sequence
- atggataatATTTGTCGGCTGTGTTGTTCTACTAAATATGTTCACAACTATATATTTGACGAAGAAAATGCATTATATATGAAAATGTCGCTTTATTTACCGATCAAGgtttTAAAAGATGACCGGATGCCGCAGAAAATATGTGATAAGTGCAGCTGCAAAGTGAATGATCTTTATCAGTTCTGTAACGATATCATCGATGCCCAAGACAGGTTACGCACAATTTTGTTACAATCTGACGATGCTGCGGACAAGCCACAAATAGTAGAAGatccaaaacaaaactcacagCCTTTGCCTGCACCAAATGCAACATTACAAAAACTCACCACTCAAACTGACAATAAATTAGATGATAAAAGCTTAGCTAGCAAATCTGTTGAAATTAAAGTAGAACCCATACCCCCATCACCCTCATCCATAAAAGTAGAGGATGATTATGATGATAGTTATGTATCTAATGTGCCTTCAGACGACAGTGAAGATGTTTGCTTGGTTAATCTTAAgaagagtaagagatgtaaaaAGGAGAATACGGAATCAAAGAATGGGGAGGTGAAAGACTCTAAAAGAGGGAAGAAAAGAAAAGGAACACTAAAAGATATTGAGTCATTACTGACGGAGAGATCAGTATTGGAAGAGAACCTTGTACAATATGCGGGGGTGAACCTGAATGTGGTGAAGGAAGAGGGGGAGAAAGAAGAGGTGGATGTGCTGCTGGGGCTGCGGTCTGTCAAGCAGGAGGGAGCCGGAGAGCTGACGGATGTGCACTATTGCTGCATGTGCTTTATACAATGCAACTCACGCACCGAAATGCTGAAGCATTacaaATGGCACGCGAGCAAGGCGGACACGAGCAAGGagcagccgccgccgccgccgccgcccgacaCCACGCCGCTGCGCTGTCCACGCTGCCGGAAGACGCTGAGCAGCGGCGAGTGGGGCGCGCACTGGCGGCGGCACCTCGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGTGCGGTGTGCGGGGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGTGCGGTGTGCGGGGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGCGCGGTGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGCGCGGTGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGCGCGGTGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGCGCGGTGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGCGCGGTGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGCGCGGTGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGCGCGGTGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGCGCGGTGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGACGCGGGGGAGTGGAGCTGGACCGCCGGCCCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGTGAGAGTGTGTACGGTGCGGTGTGCGGGGTGCGGTGTGTGTACAGACGCGGGGGAGTGGAGCTGGACCGCCGGCTCTACCGCTGCGCGCTGTGCGAGAAGACCTTCCGCGACCACCACCAGATACTCAAGCACGGAAAGACGCACAAGTTAGGCGACTCGAGCGCGTCGAGCGCGTCGAGCCAGGACAACGTCAAGCGGTTCGTGTGCGACCTCTGCCCCGAAGAGTTCATCTACATGAGATGCGTGCTGGCGCACCGGGCGCGCGCGCACCCCGAGGCGGCGCTGCGCGCGCTGGAGCTGCGCTGCGCGCTGTGCGGCCGCCGCTTCGCGCACGTCAACTCGCTGCGCCGCCACCTGCGCGCGCACTCGGGCGAGCGCAACTTCCTCTGCAACGTGTGCGGCAAGGCGCTCTCCTCCCGCGAGCACCTCAAGTTCCACATCCGCATACACACCGGCTACAAGCCCAACGTGTGCAAGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTCTGCTCGCACTGCGGGAAGGCCTTCTCGCAGCGCTCCACGCTCGTCATCCACGAGAGATACCACAGCGGCGCGCGGCCCTACACGTGCGGCGTGTGCGGGCGCGGCTTCGTCGCCAAGGGCCTGCTCTCCATGCACCTCAAGACCTCCTGTGTGGACGGGCCCCACTACACGCACAGGTTGAAAAGCAAGGATGAACTGATCCCCCCTTGCCTTACCCCACATTGCAACATATACGGAGACGAGTGA
- Protein Sequence
- MDNICRLCCSTKYVHNYIFDEENALYMKMSLYLPIKVLKDDRMPQKICDKCSCKVNDLYQFCNDIIDAQDRLRTILLQSDDAADKPQIVEDPKQNSQPLPAPNATLQKLTTQTDNKLDDKSLASKSVEIKVEPIPPSPSSIKVEDDYDDSYVSNVPSDDSEDVCLVNLKKSKRCKKENTESKNGEVKDSKRGKKRKGTLKDIESLLTERSVLEENLVQYAGVNLNVVKEEGEKEEVDVLLGLRSVKQEGAGELTDVHYCCMCFIQCNSRTEMLKHYKWHASKADTSKEQPPPPPPPDTTPLRCPRCRKTLSSGEWGAHWRRHLELDRRPYRCALCEKTFRDHHQILKHGESVYGAVCGVRCVYRRGGVELDRRPYRCALCEKTFRDHHQILKHGESVYGAVCGVRCVYRRGGVELDRRPYRCALCEKTFRDHHQILKHGESVYGAVCGVCTDAGEWSWTAGPTAARCARRPSATTTRYSSTVRVCTARCAVCVQTRGSGAGPPALPLRAVREDLPRPPPDTQARRGGVELDRRPYRCALCEKTFRDHHQILKHGESVYGAVCGVCTDAGEWSWTAGPTAARCARRPSATTTRYSSTVRVCTARCAVCVQTRGSGAGPPALPLRAVREDLPRPPPDTQARRGGVELDRRPYRCALCEKTFRDHHQILKHGESVYGAVCGVCTDAGEWSWTAGPTAARCARRPSATTTRYSSTVRVCTARCAVCVQTRGSGAGPPALPLRAVREDLPRPPPDTQARRGGVELDRRPYRCALCEKTFRDHHQILKHGESVYGAVCGVCTDAGEWSWTAGPTAARCARRPSATTTRYSSTVRVCTARCAVCVQTRGSGAGPPALPLRAVREDLPRPPPDTQARRGGVELDRRPYRCALCEKTFRDHHQILKHGESVYGAVCGVRCVYRRGGVELDRRLYRCALCEKTFRDHHQILKHGKTHKLGDSSASSASSQDNVKRFVCDLCPEEFIYMRCVLAHRARAHPEAALRALELRCALCGRRFAHVNSLRRHLRAHSGERNFLCNVCGKALSSREHLKFHIRIHTGYKPNVCKTCGKGFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHERYHSGARPYTCGVCGRGFVAKGLLSMHLKTSCVDGPHYTHRLKSKDELIPPCLTPHCNIYGDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -