Mleu011081.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000012.1:6025823-6034704[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0025 0.21 12.9 1.7 3 23 81 102 79 102 0.93 2 15 0.24 20 6.7 0.3 2 23 127 149 126 149 0.93 3 15 0.33 28 6.2 1.4 2 23 172 193 171 193 0.96 4 15 0.00045 0.038 15.2 0.1 1 23 197 219 197 219 0.97 5 15 0.29 24 6.4 1.4 1 23 224 246 224 246 0.98 6 15 0.0025 0.21 12.9 1.7 3 23 378 399 376 399 0.93 7 15 0.029 2.5 9.5 0.1 2 23 424 446 423 446 0.94 8 15 0.5 41 5.7 3.2 2 23 469 490 468 490 0.96 9 15 0.0044 0.37 12.1 0.1 1 23 494 516 494 516 0.96 10 15 0.012 0.96 10.8 0.3 1 23 521 544 521 544 0.97 11 15 0.089 7.4 8.0 1.3 2 23 552 574 552 574 0.90 12 15 0.00014 0.012 16.8 3.1 1 23 581 604 581 604 0.98 13 15 3.5e-05 0.0029 18.7 1.1 1 23 610 632 610 632 0.98 14 15 1.4e-05 0.0011 20.0 0.9 1 23 638 660 638 660 0.98 15 15 0.00029 0.024 15.8 4.2 1 23 666 689 666 689 0.98
Sequence Information
- Coding Sequence
- ATGACGTACTCGGCTGAGGTTCTGAACTTCCAGTCAGTACACGAACATGTTCCTTCCTTCCTTTTCTATTCGCGTCGCGTTCAAGTAGCCGTCAAATTAAATAACACAAAGCCAACCACCGTCGTAAAGTCAGAGAAGTATAAGGTACAGGACAATGATAAGCACTTGAACAACATACGCCAGATATTGCAATGGTCGAATGCGACACCTATCAACTCCCACGATGACATGGGGTACGGGTGTCATTACTGCAAAGAACGGTTTCAAAAAGCGGCGTCCCTGAAAAAACATACTTTAGAAGAACATAATAAAGAAGTTTACAAGATGAAGAATAAAGATATGTCGGTGCACTGCGTAAAAGTTGACATCACGAGTCTTCGTTGTAAAATATGTGACACTAGCATTCATATGATTGAAGATCTGATCACCCACCTCAAAGGCGATCACAACAAGATTATGTACACGGATATCAAGAACCAAATCTGCCCCTTCAAATTCGATTCGGACGTGCTGCGATGCACAGTTTGCTCAATAGAGTGTCCGGGATTCAATCTCTTAGTCAAACACATGCACGTACATTAccgaaattatatttgcgatATTTGTGACGCTGGATTCGCTTATAAAAGAAGTTTGATGACACATAAATTGATACATACGTCTAAGAAGTTTTCATGTGAGCTATGTCGTCAACTTTTTAATACAGAGTGGCAAAAATGGACCCACAAGCAGACTCACAAAGACGACGGGAGTGACAAAGTGGAAGTAAAATTAGGTGAAGAGAAAATAGAGGTAATTGATAATGTTAAGTTTCTAGGTTCATTTATTGACTCACAGCTTAATTGGAAACATGAATTAGCTGCTATTGAATCTTCTATCGCATCGGCTTGCTATGCTCTAAGGAGCCTTAGAGAAGAGATCGGCATGAAACAACTTAAAGCTGTGTTGCCTTTGTTGAGTCTAGGTTGCGGTCAAGTAGCCACCAAATTAAATACCACAGAGCCAACTATCGCTGAGAAGTTAGAGAAGTATGAGATACAGGACAAAGATAAGCACTTGAACAACATACGCCAGATATTGCAATGGTCGAATGCGACACCTATCAACTCCCATGATGACATGGGGTACGGGTGTCATTACTGCAAAGAACGGTTTCAAAAAGCTGCGTCCCTGAAAAAACATACTTTAGAAGAACATAATAAAGAAGTTTACAAGATGAAGAATAGAGATATGTCGGCGTACTGCGTAAAAGTCGACATCACGAGTCTTCGTTGCAAAATATGTGGCACTAGCATTAATATGATTGAGGATCTGATCACCCACCTCAAAGGCGATCACAACAAGACCATGTACACGGATATCAAGGACCAAATCTTCCCCTTCAAATTCGATTCGGACGTGCTGCGATGCACAGTTTGCTCAATAGAGTGTCAGAAATACAATCTCTTAGTCAAACACATGCACGTACATTAccgaaattatatttgcgatATTTGTGACGCTGGATACGCTTATAAAAGAAGTTTGATGATACATAAATTGAACCATACGTCTAAGACGTTTTCATGTGGACTATGTCCTCAAGTTTTTGATACAGAGGGGCAAAAGAGGATGCACAAGCAGACTGCTCACAACTTTACCGAACTCGTAAGAAAATGTGGATACTGCAACGAGAGATTCAGGGATACGAGGCAAAAAGACAAACACTTGACAGAGGTGCACGGAGTGAAACCGCGAATTTTTACATGTAAAGCTTGCAACAGTACATTCAATTCCTCGTATAGCTTGATGAAGCACATGAAGCGGACTCACTTGATGGAGAAACCGTTTCAGTGTACGGAATGTGACATGAACTTCTTTGGTCGTGACGATCTGAAGAAGCATATGGTAAAGCACACTGGCGTGAAGGACTTCGTTTGTGAGGTGTGCCACAAGGCGTATGGAAGGAGGAAGACACTGGTGGAACATATGAGGATCCATGCGAACGACAGGAGGTTCAAATGTGAACATTGTGGGATGGCTTTTGTGCAGAAATGCAGCTGGCGTGGACATATGAAATCTAAGCATGGCGAACAAGTTTGA
- Protein Sequence
- MTYSAEVLNFQSVHEHVPSFLFYSRRVQVAVKLNNTKPTTVVKSEKYKVQDNDKHLNNIRQILQWSNATPINSHDDMGYGCHYCKERFQKAASLKKHTLEEHNKEVYKMKNKDMSVHCVKVDITSLRCKICDTSIHMIEDLITHLKGDHNKIMYTDIKNQICPFKFDSDVLRCTVCSIECPGFNLLVKHMHVHYRNYICDICDAGFAYKRSLMTHKLIHTSKKFSCELCRQLFNTEWQKWTHKQTHKDDGSDKVEVKLGEEKIEVIDNVKFLGSFIDSQLNWKHELAAIESSIASACYALRSLREEIGMKQLKAVLPLLSLGCGQVATKLNTTEPTIAEKLEKYEIQDKDKHLNNIRQILQWSNATPINSHDDMGYGCHYCKERFQKAASLKKHTLEEHNKEVYKMKNRDMSAYCVKVDITSLRCKICGTSINMIEDLITHLKGDHNKTMYTDIKDQIFPFKFDSDVLRCTVCSIECQKYNLLVKHMHVHYRNYICDICDAGYAYKRSLMIHKLNHTSKTFSCGLCPQVFDTEGQKRMHKQTAHNFTELVRKCGYCNERFRDTRQKDKHLTEVHGVKPRIFTCKACNSTFNSSYSLMKHMKRTHLMEKPFQCTECDMNFFGRDDLKKHMVKHTGVKDFVCEVCHKAYGRRKTLVEHMRIHANDRRFKCEHCGMAFVQKCSWRGHMKSKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -