Mleu026793.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000031.1:9955639-9958824[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.036 3 9.2 0.1 5 23 343 361 342 361 0.96 2 11 0.00011 0.0093 17.1 0.5 3 23 369 389 367 389 0.95 3 11 5.1 4.3e+02 2.5 0.3 3 23 398 418 396 418 0.84 4 11 2.4e-06 0.0002 22.4 0.8 2 23 423 444 423 444 0.98 5 11 0.003 0.25 12.6 4.3 1 23 450 472 450 472 0.98 6 11 2e-05 0.0017 19.5 0.1 1 20 479 498 479 500 0.94 7 11 9.3e-06 0.00077 20.5 0.2 1 23 533 555 533 555 0.98 8 11 0.00077 0.064 14.5 1.6 1 23 577 599 577 599 0.98 9 11 7.9e-05 0.0065 17.6 4.5 1 23 605 627 605 627 0.98 10 11 0.0029 0.24 12.7 0.3 3 23 635 655 633 655 0.98 11 11 0.0017 0.14 13.4 1.0 1 23 661 684 661 684 0.96
Sequence Information
- Coding Sequence
- ATGAACAATTGGGCGAATTTGTGTCGATGCTGCTTGTCGCCTAATTCAGTGGTGTCAATATTGGATCTTCGGCAAAGTGTAAACGAAAAATTTCTGGATATAACAACGATTCAGGTGGCTGTTGAGGACGGTTTACCCCAGAGATTGTGCCAGGAGTGCTTTGGAGTCTTGAATTCAGCATACCAATTCCGACAGCAATGTATTAAAATGGATAAAGAACTGAAAGTTCAATTGAAATCATTATTAGCTGAAAAAAAGGcagaagaagaaaagaaagcACAGGAGTCACAAACTTTAATTATGGATGTTGatgagaaaacaaaaaaatctatgagaGAGCTAGAGGCTATTATTAAATCAGAACCAAATGATAGCGATGATGACTATTACTATGTATTAGTAATTGATGAACAAGACGAAGAGAAAACtgtaactaaaataaaattagaaaatgaaCCAACAGAGAATGTTTCTCAGGAATCATTCCAACAAACTGAGGAGTCTAACTCTAACTTTGAGAATAATGTTGATTCATTTTTAGTGTCTAATCCAAAAGTATCTATTAATGTACCAGATACAATACTTGAAAACGAAGAAGATGGAACAGAAGACTATGAAGATTATGACAATAACATGGAAATAGAAGAGATAGATGATCAACAAACACATGAACAAGTTCTTACTGAAATTGAAGCTGCACAAGAGGAGACTGAAACTGAGTTAACAGAAGTGTTGACTGAAGATATAATGAAGGATTTGCCAAAGTCCAAGAACctgattaaaatattaacaggaGGCTCAGAGAGGACTATATTATTGAAAAGTGAAGAAGGCATTAAATATCTCACTGACTCACAATTAATCTCAACTGAAGGATTGTCACAAGAAGAAGTGATATTCTGTGAAGGAGACGATTCATCACAGTTTCAAATACTGAAGTGTGATGGATCAGAATTAGTTATAGAATATGCTGATGATAGTCAAATAGCAACAGTTTTACAACAAGAAGATGGTACATTTTTATGTGACTGTGGCGAACAGTTTGAAGATTTAGCTGATTATGAAAAGCATCAATATAAACACAATCCCTCAGGTGAACATCTTTGCAACCTGTGTGGCAAAGGATTCGAGACATCTGAGATGTTAACTGGTCACATGTTACTTCACAGCGACTCTGGATTGATGGTGTCATGTCCATTTTGCAACCAGCTTATCAAACGGAATGCACTAACACAGCACATCAAGTATGGACACAACAATAAAGCACAATGTCTGATTTGCTTAAAGACGTTTGCGAATCAGAATAATTTGAAGCGTCACATGATGATTCACAGTGGTATTCGAGATTTCGAATGTGATATTTGTTTCAAGAGATTCCATCAGAAAATAACTATGCAAACTCATAGGCTCACTCACATCAACCCCAATCACCAATTTGTGTGTAATCAATGCGATAAGTCATTTGAAAACAAAGCTGCTCTCACAGCTCATAAAGAATCCGATGAATGTCCTAAGACCAAGATTGTGAAAGTAAAGGAGGAATTAATGAAGACCGTTAAGAAAGAAGTCACAACAAACCTTGGGAAGCTTCTAGGCTACGCATGCTccttatgtaataaaatgttcTCCGTGGAATCGGCTTTGGAACAGCACATAAGTACACATATGGTTGATGCGGCTGAGACTTCAGATTCAGAAAAGAATGTTAggggtaaaaatattaaacgtttcgAATGTTGTCTTTGCGGCAAGAACTGTGCTAGTCAGGCTATGTTGATTATGCATGAACGTGTGCATACTAACGAAAGACCGTTCCCTTGTCAGCTTTGCTCACTGCGATTCAAAACAAAGACCCATTTACGGACCCATCAGCTCACTCATACTCGTGAAAAGAAATTTGGGTGTTCAGTTTGTATGAAATTCTTTGCTTTAAAGGGGAATTTAGTGGTTCATCTGCGAACGCATACTGGAGAACGGCCTTATGTATGTTCGTTATGTGATGATGCGTTTATAGattcaaaatatttgaaaaagcaTAAGTTAAAGAAACATTCGATTGAGAATGTACCTTGGAATCAATATTAA
- Protein Sequence
- MNNWANLCRCCLSPNSVVSILDLRQSVNEKFLDITTIQVAVEDGLPQRLCQECFGVLNSAYQFRQQCIKMDKELKVQLKSLLAEKKAEEEKKAQESQTLIMDVDEKTKKSMRELEAIIKSEPNDSDDDYYYVLVIDEQDEEKTVTKIKLENEPTENVSQESFQQTEESNSNFENNVDSFLVSNPKVSINVPDTILENEEDGTEDYEDYDNNMEIEEIDDQQTHEQVLTEIEAAQEETETELTEVLTEDIMKDLPKSKNLIKILTGGSERTILLKSEEGIKYLTDSQLISTEGLSQEEVIFCEGDDSSQFQILKCDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPSGEHLCNLCGKGFETSEMLTGHMLLHSDSGLMVSCPFCNQLIKRNALTQHIKYGHNNKAQCLICLKTFANQNNLKRHMMIHSGIRDFECDICFKRFHQKITMQTHRLTHINPNHQFVCNQCDKSFENKAALTAHKESDECPKTKIVKVKEELMKTVKKEVTTNLGKLLGYACSLCNKMFSVESALEQHISTHMVDAAETSDSEKNVRGKNIKRFECCLCGKNCASQAMLIMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSLCDDAFIDSKYLKKHKLKKHSIENVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -