Mleu025661.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000030.1:7730650-7749379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.097 8.1 7.9 1.0 1 21 6 27 6 28 0.89 2 13 0.15 12 7.3 0.2 1 12 203 214 203 223 0.90 3 13 1.9 1.6e+02 3.8 1.3 1 17 310 326 310 327 0.91 4 13 0.00013 0.011 17.0 0.6 1 23 335 357 335 357 0.99 5 13 0.00014 0.012 16.8 1.2 1 23 370 392 370 392 0.98 6 13 2.7 2.2e+02 3.3 0.2 1 9 416 424 416 437 0.78 7 13 2.9e-05 0.0024 19.0 1.2 3 23 445 465 443 465 0.97 8 13 0.00089 0.074 14.3 3.3 1 23 480 502 480 502 0.98 9 13 1.3e-06 0.00011 23.2 4.5 1 23 508 530 508 530 0.98 10 13 0.0035 0.29 12.4 7.5 1 23 536 558 536 558 0.98 11 13 1.8e-06 0.00015 22.8 0.4 1 23 564 586 564 586 0.98 12 13 0.00022 0.018 16.2 0.0 1 23 590 612 590 612 0.97 13 13 0.00018 0.015 16.5 0.0 1 23 620 643 620 643 0.97
Sequence Information
- Coding Sequence
- ATGGGACGCCCTATATTTTACTGTCCTCTATGCTGCAAAAAAACTTTTGATTCCAAACAAGCTCTTGCTGAGCATTTGTCCAGTGTTGTGAATAATCTTGTTTGCCCTACATGTAACTCGACATATTTAACTTTGGACCGATACATAGAGCATTTAAATATTGATGACTGTGAACAATATACAGGACAGACTATAATATTTGACAATAACTATGTCGAAAACGATGATACCCCTTTACAAGGCACCAAATCTGATACAGGGCAACTACACAtagaaattaatcaAATCAATGATGGATTACAATCTGAAGCTATGAAATTAGAAAATGGAGAAGATAATCCTGTGATGGCTAATATGTATGGTGATCTCCTCCGTAAACAGTTAATCAAGCCAATCCAGTGTTCAGATTTAAAATTGGTCAATGATCCCGGTGAAAATCAATATATGATTGAAATTGATACAGAATTGAATGTTAGTGGAAATGTTGTTACAAAGCAAAATAATGATGGCACTATTTCATTGACTGAAAAagatttaaaatctGAAGATGAACCACCTAGATTAGTGAAAACAAATGATGTTGAATTAGATGAGAACCAAGAAATTTACAGTTGTAACACATGTGGGGTCTCATTTACATCTGTCATGGAGCATATTCAACTGTACCATACTGATCAAGAGGTTGTGGTTGAGGAACCAATAGAAGGTGGAAACGAGCCAATGTCTCTAATAGTTAACGAGGAAACAATAGTAGATAAACATCCTTCACGCAGGATGATAACTGAAACGGGTGACATTATTGAGGCTCCCATACCACCAGATGATGAAGCAATCAATGGACAGAAGTTAaatgATAAACCAGGTCCATATCATAAGGTTTTGGTGAAGGAAATGTGTGTCGGTGATAACAATGAACAGATAAAAGTATACCAATGTATGTTTTGTGGTACATGTGCCACATCACTGGCCAATTTCAAAAACCAACCTTGCCAGAActcAAAATACCGCTGTATGCAATGTCCTGTGGTCTACGACAATGCAAAATCTTTGTGTGCACATATGAAGATACACAAATCGAAATCTGATAAGATGAAGGTGAACCTGTCGTTCGAGTGTACAGTGTGCAATACAAAATTTCCGAGCGGCAAATCGTTAAAGTTGCACAGAAGGATGCACGACCCGATAAAGAGTGTTCCGATAGAAGGTCCCGTAAAAAGTGAAGGTGCACCGGCGAGCAGCGACAAATACATGTGTCCAGTGTGCAACAAGATCATACCCATAGAATACAAGACTGTACACCAAAATTCGCACAAAAGCACCAACAAGGTTCATTGCGACGTATGCAATAAAAAGTTTGGCTCTAAGGAATATTTGGAAATGCACATGAAAGTTCACAGTATGAAGGTTGTGGTTGGTAAAGAAGATGCAGGGCTTCCATATAattgtttatattgtaatagAAAGTTTTCAAGGCCACACGAAAAAGTTAAACACGAACGAATACATACAGGCGAGAAGCCACATTCCTGCGAGATCTGCGGCAAATCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACACACACCGGCGCCCGCCCCTACTCCTGTCAACACTGCGGGAAAAGGTTCAAAGCGCACAGCGTGTACAACCATCATTTATTAACGCATTCCGAGGTGCGCGCGTACAAGTGTCCATACTGTCCGAAAGCTTTCAAGACGTCAGTGCAACTCGCCGGTCATAAGAACTCGCATACCAAACCGTTTGCCTGCAACGTGTGCAATAGGCCGTTTGCATCTTTATACGCGGTGCGAGTACACATGGAGATTCACACGCGACAGAACAATCTGAAGTATTCGTGCGGCATGTGCGGCGCCTCGTACGCTCGAGCCTTCGCCCTCAAGGACCACATCAAGCAGGCACACAACCAGGATATCGATTCTATTACTGTGAGTGGTAAATAA
- Protein Sequence
- MGRPIFYCPLCCKKTFDSKQALAEHLSSVVNNLVCPTCNSTYLTLDRYIEHLNIDDCEQYTGQTIIFDNNYVENDDTPLQGTKSDTGQLHIEINQINDGLQSEAMKLENGEDNPVMANMYGDLLRKQLIKPIQCSDLKLVNDPGENQYMIEIDTELNVSGNVVTKQNNDGTISLTEKDLKSEDEPPRLVKTNDVELDENQEIYSCNTCGVSFTSVMEHIQLYHTDQEVVVEEPIEGGNEPMSLIVNEETIVDKHPSRRMITETGDIIEAPIPPDDEAINGQKLNDKPGPYHKVLVKEMCVGDNNEQIKVYQCMFCGTCATSLANFKNQPCQNSKYRCMQCPVVYDNAKSLCAHMKIHKSKSDKMKVNLSFECTVCNTKFPSGKSLKLHRRMHDPIKSVPIEGPVKSEGAPASSDKYMCPVCNKIIPIEYKTVHQNSHKSTNKVHCDVCNKKFGSKEYLEMHMKVHSMKVVVGKEDAGLPYNCLYCNRKFSRPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYSCQHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFACNVCNRPFASLYAVRVHMEIHTRQNNLKYSCGMCGASYARAFALKDHIKQAHNQDIDSITVSGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -