Mleu016445.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosoma leucophasiata
Gene Symbol
-
Assembly
GCA_036365455.1
Location
JAWQUS010000019.1:1571324-1615753[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.51 43 5.6 0.3 1 23 474 496 474 496 0.92
2 11 0.00031 0.026 15.7 2.1 1 23 516 538 516 538 0.97
3 11 0.017 1.4 10.3 7.4 1 23 544 566 544 566 0.97
4 11 3e-07 2.5e-05 25.2 0.8 1 23 573 595 573 595 0.99
5 11 4.8e-06 0.0004 21.4 0.2 1 23 601 623 601 623 0.97
6 11 2.6e-06 0.00022 22.3 0.2 1 23 629 651 629 651 0.98
7 11 4.4e-06 0.00036 21.6 1.7 1 23 657 680 657 680 0.96
8 11 4.1e-05 0.0034 18.5 1.4 1 23 686 709 686 709 0.96
9 11 3e-05 0.0025 18.9 1.3 2 23 716 737 715 737 0.97
10 11 2.2e-05 0.0018 19.4 1.5 1 23 743 765 743 765 0.97
11 11 0.0047 0.39 12.0 0.2 1 23 771 795 771 795 0.92

Sequence Information

Coding Sequence
ATGACGTGTTTCGTGTGCAACACACGGCCCGCGTTATCTCCGAGGACCTCTATATCCTTGATTGAAGATACTCCAACTCTTCAATCAGGCAAGAAGTTGACGGAGCGGCTAAGTGAGATAGTGAACAAACCAATAAATGAGAAATCCCTTCATTCCACTACACTGTGCAAGAAGTGTCTAAAATCTGTTACTGAATATGATTCAATACAAATAAGACTCAAGCTAATACAATCCGAATTAACAGAGCATTTTAAAAAGACGTTACCGAAACACAATCTGAATTATGACACGTACAATCAGCCGAAAGTCAAGGAGGCTAAGAAGTTTGTTCTGCCCGCGTCCAAGTTGCAGCCTTTACCTCCGGACTTCCAGTTGAAGGGGGCCAAATGGAGTACTATCAAACCTGGTGTGGGCAATAAAATTGGGcCAGTAGTAACAGTGTCAAGTGGATCCAACCTAAAAGTGACAGTCGGCACGTCTGTCCTCACTCAAAGCATAAAGACAACTGGTGCCACAAGCCAGAAAACCATGGTCATGTCGCGAAAAGAAAAGGACGTAGAATCGAAAGTGGAGGAGAGTGAGCGAGACGATAATACGAATCTAAGTACTGCCATTTCGTCTCTGTCGTCATTCCTTTCAAAGTCTAGTAGTTCGATGTTAAGTTTCAATGTGAATGGTTTGCCGAAGGATTTCCTTTCGTCTCCCATGTTGAAGATGTCTGATGGAACAGATCTGGATATCACCGTTAAGAGATTGAAAGAAGATAGTGATGCAGAGAATAACGATGAGCAGCCTATGGAGATCGATGAAGATTGCTCGCTGGCTGTTGTAACAGCAGACTCGGGAGATAAATTGGTGTTTGACGATGataagAGCCAAGACTCAGAAGACCTGAAGCCAGGCTACCTGGAACTGAGCGTCGTGGATGAAGACCAGAACAAGTTGACGCTCAGCAAACTTCAGATACTGCAGCATTACGACGACGATGATGATCCACATACTATAGTGATGGACGAGTCAGTGGGTTCGATGATCCGCGTGGTGTCTGGCCAGAAGTTACTGTACGGCTCCAACATTTCGCTCGACCAGCAAGACAATcaagattcaAACGACGAATCTCAGATAGAATTACAAGTTTCTGGAGACGAGGAGACAGCCAACGCTATTATAGCCGCCGCCCAAGAACAAGGTGGTGCATTCATTAAAGTGGGATCGGGAGAGATGTACCGCGTGAAATCCGTGCAAAGCAAGATGGAAGATTCTAAAGTTCATGTAGAAGCTTTGCAGATAATAGAAAACCGCGACGGACATTTCAAATGTTTGCTGTGCGAGAAAAATGATAAACAAAACAGCTCGTGGCCGATCTTAGAAGCGGAGGCTGCGATGAAGCATTTGAAGACTGAACATGACGCGCGGCTGTACCTGTGTCGGTTGTGTGGGTCTGTCTTCGCCAAGCGGGCGTTCTACCTCTCGCATCTGGATGAACACGTGCAAGCTTCGAGTAAGAAAATGGAGGACAAAAAAATTCAAGACAAACCGAAAACGCACGAATGCAATATATGCTTTAAGAAATACAATACGCGGACTTTGCTAGCGGAACATATGAACTTACACAGCGGAGCGCGGCCTCACGTCTGTCGCATTTGCCACAAGACCTTCGCCAGCAAATATACGCATCAGGCTCATCTTAAAACACATCTCGCGAGGCCGCGTCCCTTCAAGTGCAACGAATGTGGCAAGTCGTTCTTCACGCCACAGAACTTGGCGCAACACGCCAAAACCCACTCCGGTGTCAAGGACTTTGTTTGTAATGTTTGTGGCAAAGCGTTCGCGACCCAACACAACCTGGTGGGCCACCAGGTGGTCCACACGGGGGAGAAGCCCTTCGTGTGCGGGCTCTGCGGGAAGCAGTTCGCCCGGCGGGCTGAGGTCAGGGACCACATGCGGACGCACACTGGCGAGCGTCCGTTCTCGTGCGAGATATGCGGCGCAAGTTTCACCCAGCGCTCCAACCTCCACTCGCACAAGCGCGCCACGCACCTCGACGACAAGCGCTACGTCTGCAGCTACTGCCCCAAGCGCTTTAAGCGACGACGattaCTAGACTACCACATAAAAGCGTCTCACACGGGCGAGAGGCCACTAAAGTGTGAAACGTGTAACGCCACGTTCGTCTACCCCGAACACTACAAGAAACACATTAGGATACACAGCGGCGAGAAACCTTACACTTGCgaggTTTGCGGCAAATCATTCAACTCCCGCGACAACAGGAACACGCACCGCTTCGTGCACAGCGACCGCAAGCCGTACGAGTGTGTGGTGTGCGGCGCCGGGTACATGCGGAAACAGCTGCTCTACCACCACATGAACTCCGCCGGGCACCTTGCTGAATCAATAGTTGTGAATCAACCCAGAGTGGCTAAAGTTGCTAATATCTACGAAGCGGAAGAATTGCAATTGGAAACGAGCGATGGTAAAACAGTAGGAAAATCTTATAAAGTAATCCAAGATAGCGAAGATCCAACGTTACTAACACTCCATACCGAATCAGACTTGGGTAATGATATAAAGTCCGAAGATACCATTTTGGAAACAGTGTCCGCTGACCAACTGGATGAATCGCAGatagtaACCGGGGAAGTGAATGGTGGTATGGTGAGATTGGTCCAGATACAACTACCAGATGGAAACAACGGCTGGGTGGCTATCAACTCTTAG
Protein Sequence
MTCFVCNTRPALSPRTSISLIEDTPTLQSGKKLTERLSEIVNKPINEKSLHSTTLCKKCLKSVTEYDSIQIRLKLIQSELTEHFKKTLPKHNLNYDTYNQPKVKEAKKFVLPASKLQPLPPDFQLKGAKWSTIKPGVGNKIGPVVTVSSGSNLKVTVGTSVLTQSIKTTGATSQKTMVMSRKEKDVESKVEESERDDNTNLSTAISSLSSFLSKSSSSMLSFNVNGLPKDFLSSPMLKMSDGTDLDITVKRLKEDSDAENNDEQPMEIDEDCSLAVVTADSGDKLVFDDDKSQDSEDLKPGYLELSVVDEDQNKLTLSKLQILQHYDDDDDPHTIVMDESVGSMIRVVSGQKLLYGSNISLDQQDNQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVGSGEMYRVKSVQSKMEDSKVHVEALQIIENRDGHFKCLLCEKNDKQNSSWPILEAEAAMKHLKTEHDARLYLCRLCGSVFAKRAFYLSHLDEHVQASSKKMEDKKIQDKPKTHECNICFKKYNTRTLLAEHMNLHSGARPHVCRICHKTFASKYTHQAHLKTHLARPRPFKCNECGKSFFTPQNLAQHAKTHSGVKDFVCNVCGKAFATQHNLVGHQVVHTGEKPFVCGLCGKQFARRAEVRDHMRTHTGERPFSCEICGASFTQRSNLHSHKRATHLDDKRYVCSYCPKRFKRRRLLDYHIKASHTGERPLKCETCNATFVYPEHYKKHIRIHSGEKPYTCEVCGKSFNSRDNRNTHRFVHSDRKPYECVVCGAGYMRKQLLYHHMNSAGHLAESIVVNQPRVAKVANIYEAEELQLETSDGKTVGKSYKVIQDSEDPTLLTLHTESDLGNDIKSEDTILETVSADQLDESQIVTGEVNGGMVRLVQIQLPDGNNGWVAINS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-