Mleu011070.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000012.1:5937980-5944270[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.019 1.6 10.1 2.0 1 23 24 46 24 46 0.98 2 18 1.1 93 4.5 0.0 3 23 73 94 71 94 0.90 3 18 0.079 6.5 8.2 3.4 2 23 117 139 116 139 0.96 4 18 1.1e-05 0.00094 20.3 2.2 3 23 147 168 146 168 0.98 5 18 1.1 90 4.6 0.9 2 23 174 195 173 195 0.93 6 18 0.31 26 6.3 2.1 1 23 199 222 199 222 0.96 7 18 0.00034 0.028 15.6 1.3 2 23 229 251 228 251 0.95 8 18 0.0086 0.71 11.2 0.2 3 23 259 279 258 279 0.96 9 18 0.00027 0.022 15.9 2.6 1 22 285 306 285 306 0.96 10 18 0.058 4.9 8.6 2.0 2 23 391 413 390 414 0.95 11 18 4.5 3.8e+02 2.6 0.5 2 23 436 458 435 458 0.92 12 18 0.00032 0.027 15.7 0.4 1 23 464 487 464 487 0.96 13 18 0.0055 0.46 11.8 0.5 2 23 493 515 492 515 0.96 14 18 0.00069 0.057 14.7 0.1 2 23 520 542 519 542 0.96 15 18 0.00022 0.019 16.2 0.3 1 23 549 572 549 572 0.96 16 18 0.0028 0.23 12.7 2.5 1 23 578 600 578 600 0.91 17 18 5.8e-07 4.9e-05 24.3 0.4 1 23 606 628 606 628 0.99 18 18 0.0004 0.033 15.4 2.0 1 23 634 656 634 657 0.96
Sequence Information
- Coding Sequence
- ATGAGAAGCAACGTCAGTCAAGTCCTCGAGAAATCCACTATCATGCCATTCAGATGGCTCACAAACTCTTACAGATGCTTCTACTGCTATGAAGTATTCAGAGAGACTAACGAAATCAAAACACATACTAAAATACACACAACAACCGAAGAAATACATACGGCGATGACGAATTATTGGGATCCAGTAGTCTATGTCGACGTTTCGAATTTGGCCTGCAAACTGTGTCCGGATGTGGTAAAGGACATAGAGAATTTGACGGACCATTTGGCAGCTAAACACGAGGTGAAGTTCAATGAGAAAATCGGAACAACAATGATCCCTTTCAAACTGGACGATATATCTATGAAATGTTTAGTCTGCGCGCACAAATTTCGCACTTTCGGACATTTATTGGTCCACACGAATAGGGACCATAAGGGTTGGTCGCAGGACTTGTGCGATATATGCGGAAAACAGTTCAGGAGCTCGAAGTGTCTCCGACAGCATATACAGACTGCGCATTTCAAGAAGGAGGTGTCATGTAGACTTTGCGGAGCCACCCTCACTAGAACTACGATGAGAACTCATATGCAGCAGTTTCACGAGAAGAAATATAAATGTTTCCTATGTCCTGAGTTATTTGAGACGCATTACAAGAGATCTAGGCACGCGATGATGGTGCACGGTTCCAGAGAACTGGTCAGCTGCTTGCATTGTCCAAGAACATTTGTCTATCGCAGCACCATGATGAGGCATGTTAGAGAGCTTCACTTGAAAGAAAAGAATGCCATTTGCGGCGTGTGCGGGTGGCAGTCTTTCACGGAGAACTCTTTGCAGTTGCACATGATGAAACATAGCAACGAAAGGAACTTTAGATGCAGTTCTTGTGATAAAGCGTTTAAGACTAAGAAGACGATGCGGCAGCATTACAACACGACAAACCTCGAGAAAAAAGAGCACAGAGAGAAACTCGGCCGACTCGTCACTGTAATTCTGGAAAATTCTACTGTAATTCCCTTCCGGTGGTTCAGTAACAAGTTCCTATGTTTCTACTGCTGTTGTAACTTTAGCGAGAGCTCGGAAATGAAGCTCCATACCAGAGAAGAACACAAGGATGCCAATTTGAAAAACGCACTCAAGAACGTTATAAATAATTCTAGCAGGATTAAGTTTGATATCACAGACTTGTCTTGCAAGATGTGCCCTAAACCAATGAAGGATTTAGACCACTTTCTCGAGCATATCTCAAAAGATCACCACTTGAAATACGACCGAGATGTCGCCCAGTATCTTGACGCTTTTAAACTCAGCGACGATGACATGCCTTGTTTGGAATGCGGTGACCAATTCCGATTCTTCGGTCCACTTTTAAACcacgtacacaaacaacacaacaAATCAACGTACTATATCTGCGATGTTTGCGGCGAGAAATACATTACAAAGTTGAACTTGGATGCTCACATAAAACACATGCATTCTACAGGCGATGTGTACTGCGATATATGTAATAACAAATTTAGATCACAGCTGGTACTGGCGCGACATTACAAAAGAGTGCatatatacaatattaaatgtaaGGAGTGTCCTGAAGTTTTCACCAGTTTGGATGCAAAAAAGGTTCACCTGGCAACGGTGCACGGTGTAAAAGACTTGATGTTCCAATGTCAACTATGCCCAAAAGCGTTTCCAGTGAAAAGCAAGCTCGTTGAGCACAACAAGAGGGTACACTTGAAAGAAAAATCATTTACATGTAAGATCTGCGGATATAAAATGTTCTCATCGACCCAATTAAAGAGACACACTGTTAAGCATGATACTTCGAGACCGTATGAATGTGATATTTGCAATAAGGCGTTTCAGAGAAAGATGACTTTGATGGTCCATATGCGGATACATACGAATGATAGGAGATATGTGTGTAAGGAGTGTGGACAAGCCTTTATACAGGTCACGAGTTTGAAGTTTCATCAGAAGACTCATCATAGGTCGGGAAGCAACTGA
- Protein Sequence
- MRSNVSQVLEKSTIMPFRWLTNSYRCFYCYEVFRETNEIKTHTKIHTTTEEIHTAMTNYWDPVVYVDVSNLACKLCPDVVKDIENLTDHLAAKHEVKFNEKIGTTMIPFKLDDISMKCLVCAHKFRTFGHLLVHTNRDHKGWSQDLCDICGKQFRSSKCLRQHIQTAHFKKEVSCRLCGATLTRTTMRTHMQQFHEKKYKCFLCPELFETHYKRSRHAMMVHGSRELVSCLHCPRTFVYRSTMMRHVRELHLKEKNAICGVCGWQSFTENSLQLHMMKHSNERNFRCSSCDKAFKTKKTMRQHYNTTNLEKKEHREKLGRLVTVILENSTVIPFRWFSNKFLCFYCCCNFSESSEMKLHTREEHKDANLKNALKNVINNSSRIKFDITDLSCKMCPKPMKDLDHFLEHISKDHHLKYDRDVAQYLDAFKLSDDDMPCLECGDQFRFFGPLLNHVHKQHNKSTYYICDVCGEKYITKLNLDAHIKHMHSTGDVYCDICNNKFRSQLVLARHYKRVHIYNIKCKECPEVFTSLDAKKVHLATVHGVKDLMFQCQLCPKAFPVKSKLVEHNKRVHLKEKSFTCKICGYKMFSSTQLKRHTVKHDTSRPYECDICNKAFQRKMTLMVHMRIHTNDRRYVCKECGQAFIQVTSLKFHQKTHHRSGSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -