Mleu011217.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000012.1:6715512-6718578[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.016 1.4 10.3 1.2 1 21 72 92 72 93 0.96 2 17 0.072 6 8.3 0.2 2 23 121 142 120 142 0.91 3 17 0.022 1.9 9.9 0.4 2 23 165 186 164 186 0.97 4 17 0.012 0.97 10.8 0.1 1 23 190 212 190 212 0.95 5 17 0.045 3.8 8.9 0.3 1 21 217 237 217 240 0.76 6 17 0.035 2.9 9.3 0.2 1 23 246 269 246 269 0.93 7 17 0.0087 0.72 11.2 1.9 1 23 276 299 276 299 0.97 8 17 0.00016 0.013 16.7 4.5 2 23 307 328 306 328 0.96 9 17 6.1e-06 0.00051 21.1 0.3 1 23 334 356 334 356 0.98 10 17 7e-05 0.0058 17.8 0.2 1 23 430 452 430 452 0.98 11 17 0.012 0.97 10.8 0.8 3 23 480 501 480 501 0.95 12 17 0.081 6.8 8.1 1.8 1 23 523 545 523 545 0.97 13 17 0.00023 0.019 16.2 0.3 1 23 549 571 549 571 0.96 14 17 0.25 21 6.6 0.0 1 23 576 599 576 599 0.94 15 17 0.031 2.5 9.5 0.2 1 23 605 628 605 628 0.90 16 17 0.0041 0.34 12.2 1.9 1 23 635 658 635 658 0.94 17 17 1.8e-05 0.0015 19.7 1.9 1 23 664 686 664 686 0.99
Sequence Information
- Coding Sequence
- ATGATGTCAACCGTGATACGTGCATACATAATACCTAGCCTTGgagCCACCGGACAAGAGAACTCTGTGCTCCAATTAGAAACGCAGAAAGATACCGAGAAACGCAAATACCAAAGAAGTGCGCGCGCGGAATCCAGATACGTTACAAAGAAAAACGCCACCGCGATCCTAGACTGCTGGACTCTTACTCCGTTCAGATGGAAGAGGAATAAATTTAAGTGCGCCTACTGCGAGGAGTATTTCATGGATTGCAACCAACTCAGAGACCACGTCCGACTCTGTTCGATTCAGCATAGCGTCAAAGATATTTATAGTACTTTCAAAGAAATGTCGCTTATAAATGTAGATATAACCGGCACTGTCTGTAGGATCTGCACCCTCCCGTTTTCAGATGTCGCCCATATGCGACAACATGTCGTCGACCACGGCTACGACTTTGATACGGCATACCCAGACGGTGTTTTACCGTTCTCTCTAAACAAGGAGTCGTGGCAGTGTCTAATATGCCAAGAAAACTTCAATTACTTCCTAAAACTGTACGAACATATGAACGTGCATTATCAGAATTATATCTGTGCAACATGTGGCAAGGGTTACATGACAGCGCCTCGACTGAGGAAGCATTCGGAGGTCCATATCACGGGATGTTTTCCGTGCGACAAGTGCGGCAGGGTGTTTAATATGAGGGCCGCCAGAGATTACCACAAGGCTCGCGTACACGCAAAAGCGCCCAGATACGAGTGTCCTCAATGTAATATGAGGTTTGAAGGGTATAACGAAAGGATGAATCACTTGAATGAAGCACATAGAGAGAAAGAAGTGTCGTACAGATGCGCGCACTGCGAGCTCTCCTTCAAAACGAGCAATAAAAGAGGGATTCATGTGAGAACGGTCCACTTTCCACCGGAAAGGAACTTGTCTTGCCAAAACTGTAAACTGAAGTTTAGGACGCATTACGAATTGAAGCGGCATATGATTAAGCATACGGGAGAAAGGAATTTCTCTTGTATGGTATGTGAGAAGGCATACTCGAGGAGCGGAGCTTTAAAGGCTCACTTGAAGACGCACGAGGATTTCAgtTCCGCTATTGCGGACGCGGAGATTATTAGGCCggttaaaaaattgaaagagaATGTTGGCGCGCGTCAACTGCGCCGGCGACGTCGTGCAAACAACGTGCTCCCAGAAGAGTCGGAGAAACGGATCGCCAAAACAATGATGCGCAGGAACGCCATGCTGATTCTAGAATGTTCCACCGCGTGGGCCTTCAGATACTGCCGCAGTGCCTTTTATTGCTCCTACTGCGACACCAAGTTCATCGACCCGGCTCCCCTTCGTGAACACGTTAGGAACCACCTTAGCGAGCCACCAACCAAGCGTATATTTTCCAAACTAAGGGAAAATAATATGGTCAAAATTGACGTTACCGATCTAGGCTGCAGACTATGCGAGAGACGATTTCGGAATCTAAACGCGTTGAAAGATCATTTGGTGATGAATCACGACAAGAATCTACATCGGGATTATAGTGACGGCGTTTTGCCTTTCAGATTGGATGCCAAAGGGTATTTCTGTCAAATATGTTTCGCGCATTTCATTAATTTCGCGAAGATAAACGAGCATATGAACAGCCACTACCAGAattatatttgtgatatttgtgGCAAGGCTTTCGTCTCAAAATCTCGGTTTAGGCCCCATGTGCAGTCGCATGAAATCGGACAATTTCCTTGCGGGGAATGCGACGAAGTTCTGGATACTCGTGGCGCTAGGATGTCTCATAAATTGAAGGTACATCCTAAAGGACAGAGGTACTCCTGCCCTCGCTGCCCGGCAGGCTTCACTACTTATTACACCAGAGCAAAACATTTAGTAGAAGAACATAATCAACAGAAGTCTGAGTATGATTGCTCAGAGTGTGATAAATCCTTCGAAACAAGCTGTAAAAGAGCTGCTCACTTTCGTTTAGCTCATAAGCCTGAAAAGAGATATAAATGTCCAAACTGTCCTTTGTATTTCATGAGCAAGTCGAAGCTGAGGAAGCATTTGTCAACACATGATGCGTCTATGTAG
- Protein Sequence
- MMSTVIRAYIIPSLGATGQENSVLQLETQKDTEKRKYQRSARAESRYVTKKNATAILDCWTLTPFRWKRNKFKCAYCEEYFMDCNQLRDHVRLCSIQHSVKDIYSTFKEMSLINVDITGTVCRICTLPFSDVAHMRQHVVDHGYDFDTAYPDGVLPFSLNKESWQCLICQENFNYFLKLYEHMNVHYQNYICATCGKGYMTAPRLRKHSEVHITGCFPCDKCGRVFNMRAARDYHKARVHAKAPRYECPQCNMRFEGYNERMNHLNEAHREKEVSYRCAHCELSFKTSNKRGIHVRTVHFPPERNLSCQNCKLKFRTHYELKRHMIKHTGERNFSCMVCEKAYSRSGALKAHLKTHEDFSSAIADAEIIRPVKKLKENVGARQLRRRRRANNVLPEESEKRIAKTMMRRNAMLILECSTAWAFRYCRSAFYCSYCDTKFIDPAPLREHVRNHLSEPPTKRIFSKLRENNMVKIDVTDLGCRLCERRFRNLNALKDHLVMNHDKNLHRDYSDGVLPFRLDAKGYFCQICFAHFINFAKINEHMNSHYQNYICDICGKAFVSKSRFRPHVQSHEIGQFPCGECDEVLDTRGARMSHKLKVHPKGQRYSCPRCPAGFTTYYTRAKHLVEEHNQQKSEYDCSECDKSFETSCKRAAHFRLAHKPEKRYKCPNCPLYFMSKSKLRKHLSTHDASM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -