Mleu022023.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000025.1:22511701-22522048[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.8e-05 0.0015 19.7 4.5 1 23 194 216 194 216 0.99 2 30 0.00045 0.037 15.2 0.3 2 20 243 261 242 263 0.92 3 30 6.7e-05 0.0056 17.8 0.4 2 23 291 313 290 313 0.96 4 30 4.3 3.6e+02 2.7 2.1 2 12 333 343 332 351 0.87 5 30 0.056 4.6 8.6 2.0 1 23 363 385 363 385 0.98 6 30 0.0038 0.32 12.3 0.1 1 23 397 419 397 419 0.97 7 30 0.00038 0.031 15.5 1.7 2 23 458 479 457 479 0.95 8 30 0.00022 0.018 16.2 2.0 2 23 518 540 518 540 0.97 9 30 0.00042 0.035 15.3 1.7 1 23 590 613 590 613 0.97 10 30 0.0011 0.096 14.0 0.1 1 23 669 691 669 691 0.97 11 30 0.005 0.42 11.9 5.7 2 23 703 724 702 724 0.97 12 30 0.093 7.8 7.9 1.8 2 23 736 757 735 757 0.96 13 30 0.0037 0.31 12.4 1.0 1 23 767 789 767 789 0.98 14 30 0.077 6.4 8.2 5.1 1 23 818 840 818 840 0.95 15 30 0.0024 0.2 12.9 5.3 1 23 851 873 851 873 0.98 16 30 1.2e-05 0.001 20.2 0.9 1 23 881 903 881 903 0.98 17 30 0.00071 0.059 14.6 0.2 2 23 923 945 922 945 0.97 18 30 0.73 60 5.1 0.8 1 23 963 985 963 985 0.92 19 30 0.12 9.7 7.6 4.3 1 23 992 1014 992 1014 0.98 20 30 0.0041 0.34 12.2 5.0 2 23 1025 1047 1024 1047 0.95 21 30 0.009 0.75 11.1 0.2 2 23 1070 1091 1069 1091 0.95 22 30 9.2 7.7e+02 1.7 0.2 2 20 1095 1113 1094 1114 0.82 23 30 3.7 3e+02 2.9 3.4 2 23 1134 1156 1133 1156 0.94 24 30 0.00099 0.082 14.2 0.7 1 23 1171 1193 1171 1193 0.96 25 30 1.9 1.6e+02 3.8 4.2 5 23 1203 1221 1200 1221 0.94 26 30 0.018 1.5 10.2 0.7 2 23 1232 1254 1231 1254 0.95 27 30 2.1 1.7e+02 3.7 5.5 2 23 1271 1289 1271 1289 0.88 28 30 1.1 88 4.6 1.6 2 23 1362 1383 1361 1383 0.92 29 30 0.00096 0.08 14.2 0.2 2 23 1394 1416 1393 1416 0.96 30 30 2.3 1.9e+02 3.6 3.2 2 21 1454 1473 1453 1474 0.92
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTCGGAAAATGCAGGCTATGCCTCAAGCTCGGGGACTTTTACTCCATCTTCACGATGGACAACAACCTGCCCCTCGCCGACATGGTCATGGAATGCACCCGGGTGAAGatatatgAAGGTGATGGACTTCCTGACAAAATCTGCTCAGAGTGCATTCAGAAACTCAGCAGTGCTCATATATTCAAACAACAGTGTGAGCGATCTGACGAAGAGTTGCGACGTAATTATGTGCCGCCGCCAGGATTTATTCCACCAAACAGGGAGAGCAGCGATTCGGCTTTTTCCACCCATACAGACGTATCAAAACCTTCTTCATCCTATAATGATACTAAATTAACACCGCCGATTCGTAGTAGGAAACGAAGTCGGGAAAGTATAGATGATGCCTCCACAAGCAGTCGCTCTTACGAACGCCCGGGTATCTTCAAGAGAGTTGAAGAACTCAAGAATCAGAAGAAATCTAGAATATCCCAATCAGACAACACTTCGGAGGGCGATTCAGATTACGAAGATAATAATAGTGGCTCACATTATTCGCCCGAAACTGATTCTGATGAGCCTATGGAGTATAAGTGCAACATGTGTGACAAATCGTTCAAAAAAGCAAAATCTCTTTGTGCACATAAGAAGGTTCACAGTAAACGCGTTACTCCGAAGACTCCCGTCGCTACCCCCGAGAAGAAGGAAGACGCGGCCGACGTTGAAGACAAATTGAACTGTGACAAATGTGGCAAAACTTTCAAATTGAAGATAATGCTGAAACGACATTATGAAATATGTTCGAAATCGCCACAGAAAGAGCTCCTTATTTCCCTCCAACCGATAGATGCCGTCTTTCCCCAATCAAGCCCAAAGATCACCTGCGAGATTTGTTCTGCCAATTTTAAGCATATAGATAATCTTGCAAAGCACATGCGTGTAGTTCACGCAGCCTGCCTGAAGAGGGATACGCCGACAGCTATACAGAATGGAAAAATCTGTGTACCTTGTTTCTATTGTAATAAGTCGTTCGAAGATTATTACGTGCATTGCGCTCATTTCAACGTGTGCCCGGAGCAATTTAAAGCGGCGTCATTTGAATGTCCAGTGTGCCATAAAAATATGGTCAAGAAAGCTACATATTTCCTTCACctcaaaatgcatttttttccaTTGAATGGAGACTCAAATGAGACTTTCGAGTGCCGCATGTGCAACAAGAAATTGGCTAGCCAAGAGTTACTTGTTACTCATCTCGCTGTTCATATGTCTAATATGAAAGATCCTGAAGATGACGCTGATGTGGAATCTAGGGCCAGTACAATTGAAGATTCAACATCCGTTCATTCAGAATACAGTGGATCAAATAGTGGACCTCTACAATGTAGTATGTGTGATAAGAAGTTCAAATATAAGAAAGCTCTCAGTACGCATGAAGCAAAACACTCGGAACTGGACAAAAAGGTGAAGTCTGAACCGCCAGATAAACGGGATGATCTGCTAGACGAATATCCGCAGGGGTCCGAATCTGAATCTAGTCAAGAAGAAAATGATGGAAACACTTGTGATATTTGCGAGAAACAATTCTCATACAAAAGATTATTGATACAACATAAAAGGACAAAACATCCAATGACCGCGGGCACCAAGAGAGCGAAGATCAATCTGAAGGATTGCTCGGTGCGCTGTCTCATTTGTGACCTGGAGATGAAAGTCAGCACAGTTAACGAGCACAATCAGAAACATATATCTGTGAACATCAAACCTAGGAATCTATACACTTGCGTGGAATGCAAAGAGCAGTTCAAAAGTTGTAGTACTTTGGCGAACCATATAAAGTTGGTACACAGATTAAAGCAGCAGACTACGAAAATTGAGGCGATTGCGCCGGATTTGGCGGATTTTTGTGAGGTCGTTGTGACAAAGGCGGAACCCCTGGATGAACTCCAGAGTCACAACGGCTTTGGGGAGGATTCCGCCGATAACGGCATGCCGCTCGTCAATTTGAGCGGTTTCACATGTCCAATCTGTGGTAAACAAATGCCCACACTCATCTCGTTGAAGAGACACGTCAATTGGCATTCAAATGTTGGCAAATATATGGAGAAGAAACTGGAATGCTTTGTTTGTAAAGAGagtTTCCGTTTCCAATGTCACTACAAGCTTCATATGCGAGTGCATTACAAGGACCCCAACATTGATCCCAAGTTGCTCACATGCTCGATCTGCAATCGTAAAAGCAAACATCTTCGCGCTGCGCAAGCGCACATGAATTTTCACAAACAAACTCGCTTCAAGAATAAAGACTACCAGTGTTCGATTTGCAAACGGGTCTTCCAATACCGAAAAGTGTATTTATCGCACATGGCCATCCATTACAAGCGAGGCGAAAGCGTCTGTAACACTATAGTCGGCTCCGAACTACCCAAAACAGTTGACAAGAATGTTTTTGATGGCACCTATACTTGTGAGCATTGTGGTAAAGTGTGCGACTCTGAGAACTCTTTAAAATGTCACATCACCTGGCATAAATCCAAAACTTCGCTATATGGTGCTCGCCACGAGTGTCACCTTTGCACTCTACAGTTTACAAACAAAAAGAGACTAGAGTTACACATTCGGACGCATTACGAGGACGAAAATGGACCTTACAAATGTTCAATATGTGGTAAAGGGTACACAAATGAAGATTATTACAAGCGTCATGTAAAGGGTCACAACTTCGATCATCAATCTCATAAAAAACGAATAGAGAGATTCAGAAAGGATAAAGTGAAATGTCCTATTTGCACCCGATACTACCCTGATCTTGTGAAGCTAATTCGTCATTTAAGACGAACTCATCCTGAAAGTAAAATGATCAAAGAAGATCCCGACGCACCGCCACCCATTTATTTCTCGTGTAAATTATGCGCCAAAGTGTTCCTAGATGCGCGTAGGTTACAACATCACGAGGAAGCTCATTTGAGGAAACCAGAGTTTTTCAAATGCAAGTTTTGTGGAAAGAAAACTCCATCGCTGAAGAACCATAATCTTCACATTAAGAGTCACCTGACGCAAAAATACATCGAGAATCCCCTGAAATGTCAACATTGTGAGGAGACATTCACTAGAGGCTATGATTTGCATCACCATTTACGTGACGTACACGATATTAACGAAACATGGATTGCGCAACGCACTGAAGAAACATTAAATGGTCCGTTGAGAGAGCTGCAATGCTCCATATGTCTCAAAGAATTAGCGAGCAAAGGTAATTACGAGAGACATATAGATTACCACAACTCTTTGAGGTGCAACTATTGCTTCGATTACTTCAGCTCCCTAAAGTTCCTAGAAGGTCATATAGCATTTAGTTgtgaaaagaaaaaactgaTAGGTGACTGTGAAATTTATCCAAAAAAAGTGAAATGTGAAATATGCTACAAAGCTTTCCATTTGCAAGTGAAACTGGACTGTCATTTGCGTACACAGCATAATATTAAAGTCTTTAAAGAAAGATCTGAAGGCAAGAAAGAGTTTGTATGCGACTACTGTTTCAGAGTGTTTGAAAATGAAGACTCTCTTAGTAATCACAAAATTTATCATCGAACTATCGGCTACTATGGTTGCATATATTGTAACAGGAAGTTTAATACAATGACTCTATACAGAAAGCATAAAAACCATCACTTTTCTCAGCTTAACGTGGACAATCCAAATAAATGCGAACATTGCGACGAAACTTTTGTCGCGTTTAGAGAAATGATTTATCACATGAGAGACGTACACGGTGACGACAAAGAGTGGATAGTATATCCTAAAGAATCAATCGAGGAGACCTGTAATATTTGCCACAAATCTTTCTTTAATTTGCACAAACATCTTGCGTATCATGAAGAAAATAGATGCAAGAAATGCAGCGAGTATTTCTTCTCCCATAACGACTTCGACAACCATCTCTGTGCGATTGACAGCGATGACGAAGTAGATGAAACGAACGAGACGGATATGCGACCAAAATACGAGGAGTGTGCATTCTGCTTTAAACCTATCACAAAGAAGAATTCTAAGCGGAAACATGATCAAATCCACCGAGGCTCCGGGTCTATCTCCTGTCGCTTTTGTGATCTTAAGTTTAAAACTATCGACGCTTTCCACATTCACGGGTTTTCGCACAGAAATCGAAAGTACAACAAAAAGCCGATAAAATGTCGCGTGTGCGGTGAGAAATTTGTGAAGTATGGCCCCTTCATCAAGCACATGAGGATAATCCACAAGAGCGTAAAGAAGTTGCACTACAGGACTATTGTGAAACCGGAGAAGTGTCGTGTATGCGGGGACGACTTTCCGAATTTGCACAACCACTACCGCGCCCACTTGCAGAATCAATGTCAAAATTGCCGCAAATATTTCACGTCGTCCAAAGTGTTTTCATTGCACCAGTGTGACCAAGAGGATTCGGATCCGTCTAAGGTGTTCACATCTGACGATAATCTTCTGGACCTTATCAATAGTTATGTTCCTAAAGATGAAAAAGATGATGAAAAGTACTATGGTCACACCGACGATGATGAGGAAGAAGAAATTGGACAGGATGATCGAAGTCAAAATTCCACCGAGCTTAACGCTGACAACATGGTGCATGCGCCGATTATATCCGATGTACTGTCCCTTTACGAACAGCAAGATAGTAAGGTGGACATTTTAGATAATTTTGACAAAGAATATAACAAAAATGGAAGTGCTGAAACGAATATTGCAGCGACAAGTAATAATAAGTCTAATATTGCCGAGAACGTTGATAAAGCTAATGTTGTTGTTTTGTCTGATGACGATTCAATTGATTTTGATGATCATATTACTGTCATCTGTATTGAGGATgattaa
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMDNNLPLADMVMECTRVKIYEGDGLPDKICSECIQKLSSAHIFKQQCERSDEELRRNYVPPPGFIPPNRESSDSAFSTHTDVSKPSSSYNDTKLTPPIRSRKRSRESIDDASTSSRSYERPGIFKRVEELKNQKKSRISQSDNTSEGDSDYEDNNSGSHYSPETDSDEPMEYKCNMCDKSFKKAKSLCAHKKVHSKRVTPKTPVATPEKKEDAADVEDKLNCDKCGKTFKLKIMLKRHYEICSKSPQKELLISLQPIDAVFPQSSPKITCEICSANFKHIDNLAKHMRVVHAACLKRDTPTAIQNGKICVPCFYCNKSFEDYYVHCAHFNVCPEQFKAASFECPVCHKNMVKKATYFLHLKMHFFPLNGDSNETFECRMCNKKLASQELLVTHLAVHMSNMKDPEDDADVESRASTIEDSTSVHSEYSGSNSGPLQCSMCDKKFKYKKALSTHEAKHSELDKKVKSEPPDKRDDLLDEYPQGSESESSQEENDGNTCDICEKQFSYKRLLIQHKRTKHPMTAGTKRAKINLKDCSVRCLICDLEMKVSTVNEHNQKHISVNIKPRNLYTCVECKEQFKSCSTLANHIKLVHRLKQQTTKIEAIAPDLADFCEVVVTKAEPLDELQSHNGFGEDSADNGMPLVNLSGFTCPICGKQMPTLISLKRHVNWHSNVGKYMEKKLECFVCKESFRFQCHYKLHMRVHYKDPNIDPKLLTCSICNRKSKHLRAAQAHMNFHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESVCNTIVGSELPKTVDKNVFDGTYTCEHCGKVCDSENSLKCHITWHKSKTSLYGARHECHLCTLQFTNKKRLELHIRTHYEDENGPYKCSICGKGYTNEDYYKRHVKGHNFDHQSHKKRIERFRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPIYFSCKLCAKVFLDARRLQHHEEAHLRKPEFFKCKFCGKKTPSLKNHNLHIKSHLTQKYIENPLKCQHCEETFTRGYDLHHHLRDVHDINETWIAQRTEETLNGPLRELQCSICLKELASKGNYERHIDYHNSLRCNYCFDYFSSLKFLEGHIAFSCEKKKLIGDCEIYPKKVKCEICYKAFHLQVKLDCHLRTQHNIKVFKERSEGKKEFVCDYCFRVFENEDSLSNHKIYHRTIGYYGCIYCNRKFNTMTLYRKHKNHHFSQLNVDNPNKCEHCDETFVAFREMIYHMRDVHGDDKEWIVYPKESIEETCNICHKSFFNLHKHLAYHEENRCKKCSEYFFSHNDFDNHLCAIDSDDEVDETNETDMRPKYEECAFCFKPITKKNSKRKHDQIHRGSGSISCRFCDLKFKTIDAFHIHGFSHRNRKYNKKPIKCRVCGEKFVKYGPFIKHMRIIHKSVKKLHYRTIVKPEKCRVCGDDFPNLHNHYRAHLQNQCQNCRKYFTSSKVFSLHQCDQEDSDPSKVFTSDDNLLDLINSYVPKDEKDDEKYYGHTDDDEEEEIGQDDRSQNSTELNADNMVHAPIISDVLSLYEQQDSKVDILDNFDKEYNKNGSAETNIAATSNNKSNIAENVDKANVVVLSDDDSIDFDDHITVICIEDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -