Mleu013326.1
Basic Information
- Insect
- Macrosoma leucophasiata
- Gene Symbol
- -
- Assembly
- GCA_036365455.1
- Location
- JAWQUS010000015.1:2313018-2318155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00027 0.023 15.9 0.1 1 23 100 122 100 122 0.98 2 11 0.0008 0.066 14.4 3.3 1 23 132 154 132 154 0.99 3 11 0.013 1.1 10.6 6.8 1 23 162 185 162 185 0.96 4 11 4e-06 0.00033 21.7 0.3 1 23 190 213 190 213 0.97 5 11 8.7e-06 0.00072 20.6 2.3 2 23 224 245 223 245 0.98 6 11 6.3e-07 5.3e-05 24.2 0.7 1 23 251 273 251 273 0.96 7 11 3.8e-06 0.00032 21.7 0.1 1 23 279 301 279 301 0.99 8 11 9.6e-07 8e-05 23.6 0.3 1 23 307 329 307 329 0.98 9 11 0.00025 0.021 16.0 0.5 1 23 335 357 335 357 0.98 10 11 3.2e-05 0.0026 18.9 2.1 1 21 363 383 363 385 0.96 11 11 0.00014 0.012 16.8 0.1 1 21 391 411 391 412 0.96
Sequence Information
- Coding Sequence
- ATGTTAACTAAACAAAATGACTCAGTTGAACAATGTGAGAAAAATGATATAACCATTGAAATAATAGGCTCAAACAATTATATAGAAGACATATTGACAGTTAAACAGGAAAAAGATGTAATAGAAAATGATATAGACTTTGAACTAGATGTTTCATTTCCGAGCCCCGAATATAAAGAAGAAAGTCTTGATAAAAAATGCGGAGTGAAAATTAAAGATGACTACAACTATACTAATAATGAATGCTCAATCAATAAGATAGATATGAAAATAGAAACGAAGAAAgatattaaacattttgtatGTCCGATATGTGGAATGCCTTTATACACATTAAAGACATACGAAACACACATGCAAATACATAAAGACGATCCGAAAACATCAGCCAAATTTCAATGTTCAATGTGTATGAGAGTATTTCAGCGTAAGACATCTTTAAAGatgcatttaaaaaaacacgaaattaaatcgaaaattaaacaCACGTGTAgtatttgtaaaagagagtttCAACACGAAGCACACTTGCACAATCATATAACCTCGGTACATaagctaaataaatataattgtgaaGGTTGCGATCAAAGCTTCTCTAGGTTACCTGAATTAGAGCATCATATAATCACCGAACATAAAGACATCGCACCACGGATAAAAAGAATGAAATGTAACTTCTGTAATAAGTCATTTTATGCGCAGTCAACTCTAAAAGATCATTTGCGGACTCATACGGGTGAGAAACCATATCTTTGTGCGACTTGCGGACGAGGTTTCAGTCAGAAGACAAACTTGGCTCAGCATATGCGACGGCATCAAGGTTTGAAGCCATTCAAATGCGATCAATGTGAAAGAGGaTTCGTCTCAAAAGGCGAATTGGTCGCCCATCAGCGCATCCATAGCGGCGCTCATCCGTTCGTATGTGACGATTGTGGCAGCGGCTTCACAACTTCCAGCTCACTTGTAAAGCATCGACGCGTCCACACCGGCGAAAGACCGTACGCCTGCGACTTATGCTCCATGAAATTCGCTGCTTCTGGTACTCTGAAGAACCACAGAAGGACACATACCGGAGAGAAACCTTATCAGTGTTCGTATTGTGaaaaggcctttgttcagcgtCAGGATTTAATCAGTCATATACGCTGTCATACGGGGGAGAGGCCGTATGTTTGTACCAGTTGTGGGCAGTCGTTTAGGAAGGCTTCGGTGTTGCGCGCGCATTTGAAGCTCTTGTCATTGACCGACAAACTAGTGAAGCGAGTCCTGCTTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTAAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGCGTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTTCTTCCTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGCCTGACAAACTAGTGAAGCGAGTCCTGTGGAGTCTAGTGGAAGCGGgtggccgtcaatgtgggtaa
- Protein Sequence
- MLTKQNDSVEQCEKNDITIEIIGSNNYIEDILTVKQEKDVIENDIDFELDVSFPSPEYKEESLDKKCGVKIKDDYNYTNNECSINKIDMKIETKKDIKHFVCPICGMPLYTLKTYETHMQIHKDDPKTSAKFQCSMCMRVFQRKTSLKMHLKKHEIKSKIKHTCSICKREFQHEAHLHNHITSVHKLNKYNCEGCDQSFSRLPELEHHIITEHKDIAPRIKRMKCNFCNKSFYAQSTLKDHLRTHTGEKPYLCATCGRGFSQKTNLAQHMRRHQGLKPFKCDQCERGFVSKGELVAHQRIHSGAHPFVCDDCGSGFTTSSSLVKHRRVHTGERPYACDLCSMKFAASGTLKNHRRTHTGEKPYQCSYCEKAFVQRQDLISHIRCHTGERPYVCTSCGQSFRKASVLRAHLKLLSLTDKLVKRVLLDKLVKRVLPDKLVKRVLPDKLVKRVLPDKLVKRVLRDKLVKRVLPDKLVKRVLPDKLVKRVLPDKLVKRVLPDKLVKRVLPDKLVKRVLPDKLVKRVLPDKLVKRVLPDKLVKRVLPDKLVKRVLWSLVEAGGRQCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -