Meup004259.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- ZFHX3
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000001.1:51520132-51525953[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0003 0.039 16.3 1.8 2 23 524 546 523 546 0.95 2 11 7.4e-05 0.0097 18.2 0.7 1 23 578 602 578 602 0.92 3 11 0.011 1.4 11.4 0.4 1 22 662 683 662 686 0.91 4 11 4.1 5.4e+02 3.3 1.2 1 23 939 963 939 963 0.93 5 11 0.082 11 8.6 0.1 2 23 1062 1084 1061 1084 0.94 6 11 0.02 2.7 10.5 3.6 2 21 1145 1164 1144 1168 0.92 7 11 0.98 1.3e+02 5.2 1.3 3 23 1182 1205 1180 1205 0.88 8 11 0.00098 0.13 14.7 1.2 1 23 1221 1243 1221 1243 0.97 9 11 0.035 4.6 9.8 1.4 3 23 1251 1272 1249 1272 0.92 10 11 0.0083 1.1 11.8 6.1 1 23 1353 1377 1353 1377 0.92 11 11 0.011 1.4 11.4 0.5 1 22 1397 1418 1397 1421 0.89
Sequence Information
- Coding Sequence
- ATGCCGTCACCGATACCAGTACAATCGTCCTCGCCAACAGGTGGAGGTCTAGTGGACCGTGCCGCCGGATGGACAACAGACACACCGTCCGAGACAATCAGCTCAGCGATTAGCAGCAACGCCGCAGCAGTTGTCGTGGCCGACATGAGTCCAGAAGAAGAGCAGTCGAGCTCGCCGGTGACGGGCGTGATCGCCGGCCGGGAAGATGAGGAGCGCCGCCTGACGTCGCCACCGTCTGGCAGCAAGTTCGACTCGGTGGCCAGCAAACCGGACGCCGAGTCCGAATCGTGGGCGAACAGCAGCGACGTGGAAAAATTTGATGGCAAGATCGTGTACAACCCGGATGGGTCGGCGTACATAATCGAGGACAACAGTGAGCTGAGCGAAGATGACGGAGTCGACCTGCCGTCCGAGCTCCTCGGATCTGGCAGTATCGTGGACGGCCGGGGTGTGAACCTATCGCAAGCCGAGGTGTTCCCGCAGATCGCTAACGCGTTCTACGTGTCCCGGGCCAACTACGGGGACCTGTAcgagcagcagcaacagcagcagcaaacCAACAGTGCACCCGCCGCCGCGGCACTCAACAGGGTGTTCCAAGACAAGAAGATAGTTCCTGAAGTGCCAGTAATGCACAGCTACAGGGTGTATACGGTCCGTGACAAGGCAGGCGCGCCGGATAGCCGGACGCCGCCATTGTCCAATGACTGTTCGACGTCTTTCGTAGCGCACGCCACCGGTGAACACGGCGTCACGCTCCAGGAGGACGAGTACAACATACTTGGGCACAAGAACGCGTCAGCCATCGTGCAATGCGTAGGCAAGGAAAAGGAGCCTCTGGTGTCGTTCCTCGAGCCCCTGGCCCTGTCCGCCAACAAAGCTCATACTCGGACCGCATCCCCGTCccagtcgtcgtcgtcgtcgtctccgAGCGCCGCTCACAAAGTTCCTATTGCGTTTATTAATGACGGTAATCGTTCCTCCTCCTCCGACGGCGGTGGCGGCAGCGGTGGCGACCAGAAGGGCTGCCCGGAAAGCCTGGTGGTGCACAGGCGCAACGCCACGCCGCCCACCTCTTCTCCGAGCGTCAATACAGTTCCTGAGACGTCCGTCTCCCTACCTCAATCTGGTAGTCCTAGAAGTAATGTTAACTCGTTTAGtataagtaaaaacaataattgtagtaaTAAAGCCGCCACCTCTGCAGCCAGCGGCAGGTCCAGTATGTTCGATTGTATTATGGACCTGACTAGGAAGAGTCCAATATCCGCGTTGGCCGTGTCGTCAGGCACGTCGGCTCGGAGCAACAGCGCTTCACCGGGTGCCAGCCCGTCACCAGGCACCACACTCAGCCCACAACTCATATCTGGTGGCGCCCCGTTATCGTATCCTCAACCGCCGCCCAACTTTATGACCGGCACTACAATTGGCGTGTGTCCAGACCACATGAACGGTAGACCCAGTGGAGTGGACTGCGCAAGGTGTGAGCTCATTTTAAGTTCCTCGAGACTGGGTGGCGTGGGCGGGTCGCTGGTAGGCATGCACTCCAGAAATTCGTGTAAAACGCTTAAATGCCCGAAATGCAACTGGCACTACAAATACCAAGAGACGCTAGAGATACACATGAAAGAGAAACACCCCGAATCCGAAACGTCGTGCGTGTACTGCATCGCCGGGCAACCACACCCGCGGTTGGCCAGGGGCGAAACGTACACTTGTGGTTACAAACCGTACCGCTGCGAGGTGTGCAACTACTCGACGACTACCAAGGGCAACCTGAGCATACACATGCAGTCCGACAAGCATCTTAACAACATGCAAGAGTTACAAAACGGCGGTGTGGCCGGTACCGAGATGCAAAGGCACCAGGCCTCGTCGCCGTCCCAGCATCCGAAACAGTCTTCGGCCATGAGTCCAGGATCGACGAGCAGTCAACATCCAGCTATGAACAGCCCAATGATTAACCAGAAGCCAAAGCCCACGTTCAGGTGCGAGGTGTGCAACTATGAAACGAACGTAGCCAGGAACCTTCGCATACACATGACCAGCGAGAAGCATACACACAACATCATGGTATTGCAGCAGAGCGTCAAGCACATGCAGACGCTCAATGCCCTACAGACGCATCACCAACAGCAGATGAACTTCGAGTCGCTAATGCACTTCCACCCGGGGCTCACGCTCCCTGGAGATAAGCCGCCGCCACACTCTGAGGCAGCGCTCGCCGACATGGCGTACAACCAGGCTTTAATCATACAAATGATGACTGGCGGACAAATGCCGCCACACTTTACTGGCGACGTGTCACCCCACGTTGACACCGACATCGGACTGAACCCAGAGACCATGGAACCGCCGCCCGAGCCGGTGGACAAAAATCCGAACTTTATGTTCCAGTGCAGCACGTGCAGCACGTTTGTCACCGACTCGTTGGAAACGTTATCACATCACTTGTCCACCGACCGGACCAAAGTACGTGAACAAGAAATACTCACCGTGGTGGCTGGAAACTATATATGCAACCTGTGCACGTACAAGACAAACCTGAAAGCCAACTTTCAGCTGCACTGTAAGACCGACAAACATTTGCAGAGGCTGCAACACGTCAACCACGTGAAGGAGGGTGGGCCGCAGAACGAGTGGAAGCTCAAGTACATGTCGTCGCCCGGTGGAGTTCAGGTTAGGTGCAACGCGTGCGATTACTACACGAACAGCACGCACAAACTACAGCTCCACTGTTCCGGCCAGAGACACGAGGCCGCCTCGCTGCTGTTCCGGTACCTGCGGGACAACGACGCGGGCGACGCTTCCGTCTATCACTGTTTGCTGTGCGAGTTCTCCAGCAAGGACAAATTGCCGCTACTGCAACACGTCAGGACCGTGAAACACATGCAAATGGAGCAGCTGCACCAGATGCAAAGGCGGTCCGATGGCAAAGACATACAGACCGATATAAACATGGTGTTCCAAGTGACCAGTGCTCCGCAAACTACCATGTCCGTCGATAGCGACCAAGAACAAGATCGCGAAAATAAAGGAGACAACGAAAGTCAAAATATGTCTATGGATGCGATGAAAGCAGAAAGTTCCGAACAGTTCGAATTGGACTCCAATCGTAACTCGCCAAAAATTACCGAAGGTCAAGAACATTTAACTTCAACCGACCAAAAGAAAAACGAATTGTACTGTCCACTTTGCCAAGACGTTTTCGAAGATTTAATCAATTtcgaaaaacatttaatgaacaTTCACAGCGTAAACTCGGAAGGTCTCCAACGGCTGCTGAGTTTGGTCAACCAATCGCACTGGTTGAACTCAACAAAATCTTCACAGCAGAGTCCGCCCCACACTTCAACTAGTCCACCGTCGCCCGACTTGGACAAATCAATTGAAAAATCTGACGAAATTCAAGAACAAGATACTGACGAAAACAAATGTCCAACTTGTCAAAAAGTGTGCAAAAATATTGACGATTTATGTCAACACCAAAACGACACCGGCCACGTCGAAGTCAAACAGACGCCAAATGGACCAGGATACCTGTGCTGGAAAAAAGGTTGCAACCTGTATTTCACCACTGTGCAGAATTTACACATTCACTTCCGCGAAGTGCACGCCGGACAACAAAATATTCTTGTATCCGAGAAACACGTTTACAAATATAGATGCAACCAGTGCAGTTTGGCGTTCAAAACGCTTGACAAATTGCAAGCTCATTCGCAGTATCACGCCATAAGAGACCTGACGAAGTGCATATTGTGCAGGCGCAGTTTCAGGACCGTTGCCACGTTTCAAAAGCACTTACAGACCGCCCATCCAGATCTGGCTCAAGCCGATCTGGAAGCATTAAAGCAAAACTCCATGCTCCAATTTGAACAGTCAGCTGACGAAAAAATGGAAATCGACGAATCCGTCGATGACGAAGAAGAAAAAGACGATGAACCCGAGTGTGACAACAGTGACGATTCGATTGCGTTTAAACAACAGCAATTGATTGAAGACTACATGAATGGACAGACACTAGCTGAAGACGGGTACAATGACTCGGAAAGAAAGTACAAGTGCCACCGGTGCAAAGTGGCGTTCACCAACCAGAAGTACCTGACGCACCATAACAAAACGCTTTTACACCGAAAAGGTGAGAAGCAGACCTATCCGATGGAAAAATATCTCGACCCGAACCGGCCTTTCAAGTGTGAGGTTTGCAAAGAGTCTTTCACGCAGAAGAACATACTTTTGGTGCACTACAACTCTGTTCTTCATTTACACAAGCTGAAGCGGTCCATGCAAGAACAACAGCAACAGCTAAACAACAATAACACGCCTATCGTATCAAACAATTCATCTTTCGCCGCCATGAATGCGGCAGTCTAA
- Protein Sequence
- MPSPIPVQSSSPTGGGLVDRAAGWTTDTPSETISSAISSNAAAVVVADMSPEEEQSSSPVTGVIAGREDEERRLTSPPSGSKFDSVASKPDAESESWANSSDVEKFDGKIVYNPDGSAYIIEDNSELSEDDGVDLPSELLGSGSIVDGRGVNLSQAEVFPQIANAFYVSRANYGDLYEQQQQQQQTNSAPAAAALNRVFQDKKIVPEVPVMHSYRVYTVRDKAGAPDSRTPPLSNDCSTSFVAHATGEHGVTLQEDEYNILGHKNASAIVQCVGKEKEPLVSFLEPLALSANKAHTRTASPSQSSSSSSPSAAHKVPIAFINDGNRSSSSDGGGGSGGDQKGCPESLVVHRRNATPPTSSPSVNTVPETSVSLPQSGSPRSNVNSFSISKNNNCSNKAATSAASGRSSMFDCIMDLTRKSPISALAVSSGTSARSNSASPGASPSPGTTLSPQLISGGAPLSYPQPPPNFMTGTTIGVCPDHMNGRPSGVDCARCELILSSSRLGGVGGSLVGMHSRNSCKTLKCPKCNWHYKYQETLEIHMKEKHPESETSCVYCIAGQPHPRLARGETYTCGYKPYRCEVCNYSTTTKGNLSIHMQSDKHLNNMQELQNGGVAGTEMQRHQASSPSQHPKQSSAMSPGSTSSQHPAMNSPMINQKPKPTFRCEVCNYETNVARNLRIHMTSEKHTHNIMVLQQSVKHMQTLNALQTHHQQQMNFESLMHFHPGLTLPGDKPPPHSEAALADMAYNQALIIQMMTGGQMPPHFTGDVSPHVDTDIGLNPETMEPPPEPVDKNPNFMFQCSTCSTFVTDSLETLSHHLSTDRTKVREQEILTVVAGNYICNLCTYKTNLKANFQLHCKTDKHLQRLQHVNHVKEGGPQNEWKLKYMSSPGGVQVRCNACDYYTNSTHKLQLHCSGQRHEAASLLFRYLRDNDAGDASVYHCLLCEFSSKDKLPLLQHVRTVKHMQMEQLHQMQRRSDGKDIQTDINMVFQVTSAPQTTMSVDSDQEQDRENKGDNESQNMSMDAMKAESSEQFELDSNRNSPKITEGQEHLTSTDQKKNELYCPLCQDVFEDLINFEKHLMNIHSVNSEGLQRLLSLVNQSHWLNSTKSSQQSPPHTSTSPPSPDLDKSIEKSDEIQEQDTDENKCPTCQKVCKNIDDLCQHQNDTGHVEVKQTPNGPGYLCWKKGCNLYFTTVQNLHIHFREVHAGQQNILVSEKHVYKYRCNQCSLAFKTLDKLQAHSQYHAIRDLTKCILCRRSFRTVATFQKHLQTAHPDLAQADLEALKQNSMLQFEQSADEKMEIDESVDDEEEKDDEPECDNSDDSIAFKQQQLIEDYMNGQTLAEDGYNDSERKYKCHRCKVAFTNQKYLTHHNKTLLHRKGEKQTYPMEKYLDPNRPFKCEVCKESFTQKNILLVHYNSVLHLHKLKRSMQEQQQQLNNNNTPIVSNNSSFAAMNAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -