Meup015810.2
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000002.1:8241493-8245233[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.5e-06 0.00032 22.8 0.2 1 23 107 129 107 129 0.96 2 12 0.00028 0.037 16.4 4.9 2 23 139 160 138 161 0.95 3 12 3.3 4.3e+02 3.6 3.7 1 23 205 226 205 226 0.91 4 12 0.031 4.1 9.9 1.2 1 23 298 320 294 320 0.88 5 12 0.013 1.7 11.2 6.0 2 23 391 413 391 413 0.96 6 12 0.0011 0.14 14.5 1.2 5 23 476 494 473 494 0.94 7 12 0.00017 0.022 17.1 2.9 1 23 497 519 497 519 0.97 8 12 0.21 27 7.4 2.3 2 21 533 552 532 553 0.94 9 12 6.4e-05 0.0084 18.4 0.6 2 23 613 635 613 635 0.95 10 12 0.0011 0.15 14.5 0.2 2 23 643 665 642 665 0.95 11 12 0.023 3 10.4 1.4 1 23 696 718 696 718 0.98 12 12 0.03 3.9 10.0 0.1 1 20 723 742 723 742 0.94
Sequence Information
- Coding Sequence
- atgacttcAATGAAAGACTTCATACAAGTTGAAGTCACTGATGATGCTGATGCTGTTACCAGtgaattATATGTTGAAAACATTATTGAAAATCATGCATGGTATACAGTTGGAGATAATCATGTTTCTTTGGTATCTGAAAATACTGAGAAAGTTATTAAGCTTGAAACTGATATGTTGGATGATTGTATGTGGGAAAGTAGAATCGAAATTACCAATAATGTTGACAACCCAAGTAATATGGAGTTACCCTTGGAATGTCAGGATGactcagataataatatttacttaaatcatttaaatacaaGTGATTTAATATTTCCTTGTAATATTTGTGGaaaaagttttgttttaaattatcttttaaaaaacCACATGGCCGAACACAAAAGACAAGTacattataaaactaataaatgtaaattttgtggaaaacagtttaagttaaaatttggtttGAACAGACACATTCAAAAACATCACAATTCTATGTGTGCAACAATTGTATCAACTGCTCCACACACCGAAATCCAAAACAATGACATTATTTCACGTCCAGGTCAAACTGAAATCATATCCAATACCTTAGAAAGAAAAAGTTCAGATCAAATGTATAAATGCAAGATTTGCGGACTTTTTATTGATTGCTCTAAGTATATTGAACACAAAAAATACCATGAAAGAAGAAATAGTATTGTATCTATAGTTAGAGACACACCTTATTTTTGTATTAGAAAATTGTCTAATATTGAACATGGATTTCGCAATGATGATTATGATCAGCCATCACAAAACAAGCTTATATTTACATGCAGAATTTGTAAAAATCCTCCATCTACAGATATACATTCATTTGCAATACACATGAGTGATCACAGGGAGTGTAATATGCATGAATGTATTGTGTGCGATAAAACATTCAACTCTGTAGTTCTTTGGACAGCCCATATGACCTATCATCAACAGCAAATAGATTTAAATGTGTCAACAGTTCAGTTTAATCTTtttgaaagtgaatctaataCATTTAACACTAATAATGAGAATATTAAACTTGAACCAAATATAATCCAAAACAGCATAAGTATAGAAGATAACAACACTGATTCTGCAACAATGTCAAGAAACCAAAAAAAAGAAACCAAATCAtcgtcaattaaaaaaacaaattactgtaatttatgtaaaaggAAATTTACAAAGCGCTGTTATTTTACAAATCATATGATGATAaggcataaaataaatacaaatacaccAAAACAACTTACATCAATTGATTGTAATGAATCAACCATTCTGTCTGAAAACATAGAGTTGACTAATGAGTCCGAAGACAAATTATCGGTTCCGGTAAATGACAAAAATTACAGTCTGAACAACCATGTTAATAAAAGCAATGAGAAGAAATCAACGTTTTGTATACTTTGCAACAAAAATTTTGCACATCTTGGTGCCCTAACCAATCACATGCGTATTCATGTAGGACATCCCTGTGGTTTTTGTGAGAAAAAATTCTCTACTAAATTACAATTGAATGTTCACCAAAAGTCACATTCAAAACTAAAGATTGATTCTATAAGTcaagatataataaaatgtcgATATTGCAAAAAAGAATGTAACTCGATATTTCAGTGGAAAAATCATATGTCAATGAGCAAAGAATGTCGTCGCCATTGTAAAAGTTACCTTCCAGAGTTTACATCAAATAAAACTGTTTTAGATAAAACGTATTTGAATACCGGTTCACAAAAAGACAAATTAGTGGACATAATTCAACAAAAACCAGCGATTATTAAGAAACCAAATAGAAGTAATCAGATTAATGGTGCTAAATGTGATTTATGTGGTAAAATATActgtaatgaatataatttaattcgcCACGTATCCGTGGTTcacaaaaaaacttataaaccTGTGACCTGTAATGTTTGtggaattacattaaaaaacaaattttcttaCGAAGCACATTTAAGAGGTACacacaaacaattatttaaacattatgaaGGAACAAACTCTACAAAAAAAAGAACCAGCGAACAAATTATatcagttaatacaaaaaaagtgaCATACACTTGCAGAATGTGTAGAATTAAGTTTTCTGacattattgcatttaaaaagcATTCAAAGATACATACTTCAGATAAGTATACGTGTAATGACTGTGGTCAGCAGTATGAGACTAATCTTGCTCTAGGTAATCACATTTGGGAAAACCACAGTgctatctaa
- Protein Sequence
- MTSMKDFIQVEVTDDADAVTSELYVENIIENHAWYTVGDNHVSLVSENTEKVIKLETDMLDDCMWESRIEITNNVDNPSNMELPLECQDDSDNNIYLNHLNTSDLIFPCNICGKSFVLNYLLKNHMAEHKRQVHYKTNKCKFCGKQFKLKFGLNRHIQKHHNSMCATIVSTAPHTEIQNNDIISRPGQTEIISNTLERKSSDQMYKCKICGLFIDCSKYIEHKKYHERRNSIVSIVRDTPYFCIRKLSNIEHGFRNDDYDQPSQNKLIFTCRICKNPPSTDIHSFAIHMSDHRECNMHECIVCDKTFNSVVLWTAHMTYHQQQIDLNVSTVQFNLFESESNTFNTNNENIKLEPNIIQNSISIEDNNTDSATMSRNQKKETKSSSIKKTNYCNLCKRKFTKRCYFTNHMMIRHKINTNTPKQLTSIDCNESTILSENIELTNESEDKLSVPVNDKNYSLNNHVNKSNEKKSTFCILCNKNFAHLGALTNHMRIHVGHPCGFCEKKFSTKLQLNVHQKSHSKLKIDSISQDIIKCRYCKKECNSIFQWKNHMSMSKECRRHCKSYLPEFTSNKTVLDKTYLNTGSQKDKLVDIIQQKPAIIKKPNRSNQINGAKCDLCGKIYCNEYNLIRHVSVVHKKTYKPVTCNVCGITLKNKFSYEAHLRGTHKQLFKHYEGTNSTKKRTSEQIISVNTKKVTYTCRMCRIKFSDIIAFKKHSKIHTSDKYTCNDCGQQYETNLALGNHIWENHSAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -