Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010000005.1:18107631-18115954[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00073 0.096 15.1 0.3 2 23 189 210 188 210 0.96

2 9 4.1e-06 0.00053 22.2 1.8 2 23 290 311 289 311 0.98

3 9 1.6e-05 0.002 20.3 1.4 1 23 319 341 319 341 0.96

4 9 0.015 1.9 11.0 0.1 5 22 348 365 346 365 0.94

5 9 2.3e-05 0.0029 19.8 0.2 1 23 372 394 372 394 0.98

6 9 2.3e-06 0.00031 22.9 1.6 1 23 400 422 400 422 0.99

7 9 3.1e-06 0.00041 22.5 1.1 1 23 428 450 428 450 0.99

8 9 7.2e-06 0.00094 21.4 1.7 1 23 456 478 456 478 0.99

9 9 0.00011 0.014 17.7 1.1 1 21 484 504 484 505 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00073	0.096	15.1	0.3	2	23	189	210	188	210	0.96
2	9	4.1e-06	0.00053	22.2	1.8	2	23	290	311	289	311	0.98
3	9	1.6e-05	0.002	20.3	1.4	1	23	319	341	319	341	0.96
4	9	0.015	1.9	11.0	0.1	5	22	348	365	346	365	0.94
5	9	2.3e-05	0.0029	19.8	0.2	1	23	372	394	372	394	0.98
6	9	2.3e-06	0.00031	22.9	1.6	1	23	400	422	400	422	0.99
7	9	3.1e-06	0.00041	22.5	1.1	1	23	428	450	428	450	0.99
8	9	7.2e-06	0.00094	21.4	1.7	1	23	456	478	456	478	0.99
9	9	0.00011	0.014	17.7	1.1	1	21	484	504	484	505	0.94

Sequence Information

Coding Sequence: ATGAATGATCCAGACACTAAAGATtttgATAACGGCGGCGGTCTTTATAACGGTGACTTTGATACCGGCGACTCGAACAACGGCGGCGGTTTTTATAACGGCGGCGGTTCTAACAACGGCGACTTTGATACCGGCGACTACAACAACGGCGGCGGTATCAGTAACGGCGGCGGTTCTTATAACGGCGGCGGTTCTTACAACGGCGGCGGTTCTTACAACGGCGGCGGTTCTTATAACGGCGGCGGTATTAGTAGTGGCGGCGGTATTTATCACGGCGGCGTTTGGGGTAGCGACTCCCGAGAGATGTGGTATCTAGCCTGTCAATACGGTACACGTATTACTAGATACCACAAATCTACTACAGCTACGGGCCACTCCTCTGGTTTAGGTGTGTGCAGCTTaactATATGTCAAGCTGTAGAAAATATAAAGACAATTGATGCTgaatttaaaacagaaaaatatgttattggTATCTTTGAATTCGAAGGAACAGTCTCTGAAACAAGATCGGATCTCATTTCTCTTATGAATTCGGATATGAGGTCCAAGGAAAAGCCTCTCATCTGTAATGTCTGTGATAAAGAATTTagatttgtatacaaatttaatgaaCATATGGCGGTGCATACTTACAAAGAAGCTAAAGAAAAAATGAAGACCATTAGTACAGAAATTAGAGTGGAAAAATATAGTATGAGTTCAAGCAATAAAGACAAAGTTAAGACAGTTGATACAGAAGTTAAAGTGGAAAAACATATCGGGATTGGTGAATTCGAAGGAACAGTATTGAACAATAGCCATTCATCAAAGCTCATTACTCATATCAGTTCTGACAATAGACCTAAGTTACAGGATACTCATCAAAAATGCAACATCTGCAATTTATCGTTCAATTCAAAAAGACTTTTGACAATTCATATGAAGACTCATACCATTAAAAACAAAGAGATATTCATTTGTAACATttgtaatatatcatattataggaAATCATATTTGAAGAAACACTTACTGCTTCATATTGGAGAAAACCCTTTCATATGTAACAAAACATTTAGTGACAAACCAAATTTTGATATCCATAAGAGAACAGATactggaaaaaaaaagtataaatgtgATATCTGTGAAAAAGCATTAACTACTTCAAGCGGTTTAATATCCCATACAAGATTACATACCGGGGAAAAACCATTCAAATGTAAATTCTGTGAAAAAGCATTTGCTCAAGAATCTAATTTAAAAGTGCATAACAGGACACACACTGGAGAAAAACGGTACAAATGTAATTTCTGTGAAAGAGCATTTGCTCAAGAATCTAATTTAAAAGTGCATAACAGGACACACACTGGAGAAAAACGGTACAAATGTGAAATCTGTGATGAACGGTTTACAAATTTTGCATCTCTGAAAAATCATTCACGGAAACATGCAAATATAAAACCTCACAAATGTGATATCTGTTATAAAACATTCACTACTTCAAACAGTTTAATATCCCATTCAAGGgttaggttagattcCCTCGCTGGAACGGCCTCTGGAACGAACTCGGCGCCCACCTGGGACACCCGCCGGGTGCCGACGACATTCCAGAGCTCCTGGAAGGACCCGACTTCTACCTGCTGCTGGAGGACAGGGCCACCCTCCTGTACAACGCCGGAGAAGGCTTCAGGTTGCTGTACAAATCCATTGAGAACAGCCTGTCGCTCAAAGAGTAAGAGGAGCGCGCAAGACAAGCGGCCGGAGGCATGGCTCGAGTTCCCATCCGCGTCGTCCAACCAAGCCATTGACCAGTCCGCACACCCGCCAGAGGCACCCGGTGTCAACGCCGAGAGCCAAAGCCACGTCCAGTCGAGTCCAAAAATCGACCGGAAAAGCCGACTCCCGGGACCCGCATCTCCGCCCCTGTTGGGGGTTGGAGATTCGGGTTGGCGGGTCCACGTCCAGAGCCCTAAAAGCCGGACGAGTGGCATCGGAGGGGGCAAAATGTTTGCTCTCGAAGCCGTCAGACTAAAACCGGCAAAAAACGCGGTTTCAAAAAAAAGTGTCAACTCAATGTACGAATTGGCCGCCCGGAACGAGAGCACGCGCTCCCAATGTGGCAGCTAG
Protein Sequence: MNDPDTKDFDNGGGLYNGDFDTGDSNNGGGFYNGGGSNNGDFDTGDYNNGGGISNGGGSYNGGGSYNGGGSYNGGGSYNGGGISSGGGIYHGGVWGSDSREMWYLACQYGTRITRYHKSTTATGHSSGLGVCSLTICQAVENIKTIDAEFKTEKYVIGIFEFEGTVSETRSDLISLMNSDMRSKEKPLICNVCDKEFRFVYKFNEHMAVHTYKEAKEKMKTISTEIRVEKYSMSSSNKDKVKTVDTEVKVEKHIGIGEFEGTVLNNSHSSKLITHISSDNRPKLQDTHQKCNICNLSFNSKRLLTIHMKTHTIKNKEIFICNICNISYYRKSYLKKHLLLHIGENPFICNKTFSDKPNFDIHKRTDTGKKKYKCDICEKALTTSSGLISHTRLHTGEKPFKCKFCEKAFAQESNLKVHNRTHTGEKRYKCNFCERAFAQESNLKVHNRTHTGEKRYKCEICDERFTNFASLKNHSRKHANIKPHKCDICYKTFTTSNSLISHSRVRLDSLAGTASGTNSAPTWDTRRVPTTFQSSWKDPTSTCCWRTGPPSCTTPEKASGCCTNPLRTACRSKSKRSAQDKRPEAWLEFPSASSNQAIDQSAHPPEAPGVNAESQSHVQSSPKIDRKSRLPGPASPPLLGVGDSGWRVHVQSPKSRTSGIGGGKMFALEAVRLKPAKNAVSKKSVNSMYELAARNESTRSQCGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -