Meup027824.2
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000002.1:98081526-98097555[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0062 0.8 12.2 4.5 1 23 340 362 340 362 0.99 2 15 0.00012 0.015 17.6 0.2 1 20 418 437 418 438 0.97 3 15 8.1e-06 0.0011 21.2 0.8 1 23 447 469 447 469 0.99 4 15 1.3e-05 0.0017 20.6 0.6 1 23 475 498 475 498 0.96 5 15 0.0018 0.24 13.8 8.9 1 23 504 526 504 526 0.96 6 15 0.0043 0.57 12.6 0.0 1 23 532 554 532 554 0.97 7 15 0.00032 0.042 16.2 2.9 1 23 560 582 560 582 0.98 8 15 0.00077 0.1 15.0 1.7 2 23 789 811 788 811 0.95 9 15 0.0047 0.62 12.5 1.0 1 23 817 840 817 840 0.94 10 15 0.0036 0.47 12.9 0.1 1 23 856 878 856 878 0.97 11 15 0.11 15 8.2 5.6 2 23 885 906 884 906 0.97 12 15 0.00061 0.079 15.3 0.1 1 23 910 933 910 933 0.93 13 15 0.0081 1.1 11.8 1.5 1 23 939 961 939 961 0.96 14 15 9e-06 0.0012 21.1 6.3 1 23 967 989 967 989 0.99 15 15 0.016 2 10.9 1.9 1 23 995 1017 995 1017 0.96
Sequence Information
- Coding Sequence
- atgaaCGAAGCTAATATGGCTAATAATCAAGATATAAGTCTGCAATCATGTTCAATAAATGATGTATGCAGATTATGTGcaaattttgatgaaaatatgaTACCAATTTATGCTGATGAAGGAGCAGACCATAtgttagaaaacaaaataaaaacccaTCTTCCATTTATAAATatttctgAAGATGATTTATTACCTAAAAGAGTATGTTATCATTGTGCGTCTGCTGTGCTTGTATGGAATGAGTTATATGAATGCAGCACTGATGCAGATCAAAAACTTCGAAGTATGTTTCAATTTATTCCATTTGAGCAAAATCAGTGCAAGgtGGATATTCGAGAAGACGAAAGGTTAAATCCAACATTAAAAAGGTACATTGACTTGACAGAACCAGGTGgaacattgaaaataattcCTACTAAAGAAACATCACTTTCAAACAATTATTCCTGttcattttgttttgaaaaatttttgAAGATTAGAGATAAAGTAAAGCATGACCGTGATGTTCATGGTGTTCAGACTAATATATtgccaataaaatatgtaagtgacaggtatattgataatatgaaaaattcaatttcaaatacTGAGGATAACCGTACAGAAAAAAATCTTTCCAACATAGTtgatttaaacaatacaaaatcaacacaaaactttaaaataaataattatgatgtattatgCATTACGTGTAATCTTTCTTTTAAATCCTCGTTTGAAAAGTTAGAGCACGACCAAAAATTGCACACTGTACAGACAACTACCCGAAGAAGCAAACGTATTGGTATAACTAAAAGTTATGATGAATTGTTCGATGATGAATCTGATTTTGATGAAGAAACAAAACATGATACTTCAAATTCTGGAAAGttaaatagtaattttgttAAATCACATTCTActgatcaaaaaaataatattgcaatgaATTTGAAGAAAGAGAAAAAGTTGGAAGATATAAAAGATGAGATTATTGAATCTGATGAAAAGTCTGATATTGAAGATTTCAAGTGTTATTACTGTAATCAAAAATTTCCTTCTAAACACTTGGCTTCAAAACACGTCCGTTCACATATGCTAAATGATAAAAAACCAATTCCAAAAAGTGACATTTATGATAAGTATAAAGTTATGGtagataacaaattatattacaagtGCGATCAATGTAACTATAATGTTGAAGGTAGAAGATACAAGTTTGTGTATCATATGAGAgtgcacactggtgaaaaaccatacACTTGTGAAATTTGTAGTAAACAGTTCCGTACAGCAGCATTTTTGAGACGGCATATTGTATGTTTCCATGATAAAGTTCGTAGTTATCAATGTGATATTTGTGGACGCTCGTTTTCTGAGAAACGTAATGTTGATGATCATAGAcgtacacacactggtgaaCGTCCATTTGTTTGTGAAACATGCGGTAAAAGTTTTGCTCAAAGGTCATCAATGAAAATTCATTGGAAACAAATGCATGAAAGTATAAAAGCACATAAATGTGAATATTGTGACAAAAGTTTTATCAGAAGATGTCATTTAGTTGCACATTTAACCCACCATACAGGAGTGCGTAACTATGTATGTGCAGTATGTGGTAAAGCATTCTTGCGCAGTGGTACACTTAAAGGTCATACAGCGGTGCACAGTTCAGAAAGACCTTTTCAATGCACTATTTGTGGagatacatttaaattgaaaaaacatttaaaacagcaTGGACGAGTTCATGGAACTCAGCATTCATTTGTTAATATGCCTCAATTTATTTCAACAACTGTAGATAATCAGAGGGGTTcacttgaaATCTCAGACATAATATTCGACAGAGAAGTGGATAACGATTCTGTGGACgacaatatgtacctaaatgCAGCTGGCCTCGATGACGACATAAATGGGCTGATGAATTGCCATCGGCTGGAAGACATTTCGGTGGCGGACGATTGCAACCTTGTGGTGCCGAAACAAGAGTACCTGGACGTCTTGACAGAAGACAGCAACCACGTAGAAGTACTTGACCCGCAATTGCCCACCGACGTGAACGTCAACTCGGTTTGCGGAGGAGACGATATCACTAATCACGACAATTGTGAAGACTTCAAACCACTTATAGATTCGATTAACGTCAATGATACTGAGGATGGTGAAATGGATCACCTGCAAAAAGATGGTGACGGAAGCAACGGGATGGACTGTGAAATGGACAATGAGAACGATCATGAAGACGAGGATGAAGATGAGGACGAGGATTGCAACCCGCTAGGCAACATGCAGGTGAGACAGTTGTACTTGGACAGTTCGTTGGTCGGAACTGCCTTAGATGTGGATGAACAGCAACCGGAGACCATGTGCCAAATATGTGCGACCGTGTTCAAGACCCGGTACAACCTGTTACGGCACTTTCAGAAGCGGCACCCCGAGTACAAGATGTTTGAGTGCGATCTATGTCGCATCAGCTTCTCGTCCGTTAAACAGTTCAAGAACCACCTTGAAGAGAAACACTCCAAAATACACCCGACGAGCACAATCGACTCAAAGCAAGTGCGTTTCGCATGTGACGTGTGCGGTAACATGTACAAGAATAAGGCATCTGCTATGAACCACCTTCTGACACACACCGCCAAAAAGAATGTGCGCTGCACGCACTGTGACTTCACATGTTACACCAAGCAACAGCTAGGCGTGCACCAGACCAAGCATGATAAGCGGTTTGCGTGCGACATTTGTCTCAAACGGTTTGCACAAAAATCACAGTTGGATGTGCATGTCAACGCAGTCCACTACAACCAAAGGCCATTCTCGTGCGTGCTTTGTAACAAGACGTTCAAGACAAAGGGGTCGCATGACGCTCACATGATCGTGCACACAGACACCAGAAATTACCAGTGCCCGCACTGCGATAAAAAGTGCCGGAAGCGGTATGACCTAACGTTGCACATCCGGACTCACACGGGTGAAAAACCGTTTAAGTGCAGTGTGTGCGGACGTGGGTTCGTGCAGATGTGCGATACGCGCAAGCACGAGATGCTCCACTTTAAGCCGGGCAAGCGGAAACACTTATTGTTTGAGTCTTTGGAGGTGGGAATTATCGATGACGAATGA
- Protein Sequence
- MNEANMANNQDISLQSCSINDVCRLCANFDENMIPIYADEGADHMLENKIKTHLPFINISEDDLLPKRVCYHCASAVLVWNELYECSTDADQKLRSMFQFIPFEQNQCKVDIREDERLNPTLKRYIDLTEPGGTLKIIPTKETSLSNNYSCSFCFEKFLKIRDKVKHDRDVHGVQTNILPIKYVSDRYIDNMKNSISNTEDNRTEKNLSNIVDLNNTKSTQNFKINNYDVLCITCNLSFKSSFEKLEHDQKLHTVQTTTRRSKRIGITKSYDELFDDESDFDEETKHDTSNSGKLNSNFVKSHSTDQKNNIAMNLKKEKKLEDIKDEIIESDEKSDIEDFKCYYCNQKFPSKHLASKHVRSHMLNDKKPIPKSDIYDKYKVMVDNKLYYKCDQCNYNVEGRRYKFVYHMRVHTGEKPYTCEICSKQFRTAAFLRRHIVCFHDKVRSYQCDICGRSFSEKRNVDDHRRTHTGERPFVCETCGKSFAQRSSMKIHWKQMHESIKAHKCEYCDKSFIRRCHLVAHLTHHTGVRNYVCAVCGKAFLRSGTLKGHTAVHSSERPFQCTICGDTFKLKKHLKQHGRVHGTQHSFVNMPQFISTTVDNQRGSLEISDIIFDREVDNDSVDDNMYLNAAGLDDDINGLMNCHRLEDISVADDCNLVVPKQEYLDVLTEDSNHVEVLDPQLPTDVNVNSVCGGDDITNHDNCEDFKPLIDSINVNDTEDGEMDHLQKDGDGSNGMDCEMDNENDHEDEDEDEDEDCNPLGNMQVRQLYLDSSLVGTALDVDEQQPETMCQICATVFKTRYNLLRHFQKRHPEYKMFECDLCRISFSSVKQFKNHLEEKHSKIHPTSTIDSKQVRFACDVCGNMYKNKASAMNHLLTHTAKKNVRCTHCDFTCYTKQQLGVHQTKHDKRFACDICLKRFAQKSQLDVHVNAVHYNQRPFSCVLCNKTFKTKGSHDAHMIVHTDTRNYQCPHCDKKCRKRYDLTLHIRTHTGEKPFKCSVCGRGFVQMCDTRKHEMLHFKPGKRKHLLFESLEVGIIDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01038669; iTF_00973228; iTF_01033216;
- 90% Identity
- -
- 80% Identity
- -