Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010000001.1:67922305-67927671[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.7e-05 0.0023 20.2 2.1 2 23 286 307 285 307 0.97

2 10 1.9e-05 0.0025 20.0 0.8 3 23 315 335 313 335 0.98

3 10 5.4e-06 0.00071 21.8 0.7 2 23 342 363 341 363 0.96

4 10 3.5e-07 4.6e-05 25.5 0.4 1 23 369 391 369 391 0.99

5 10 0.00012 0.016 17.5 0.8 1 23 422 444 422 444 0.99

6 10 3.2e-07 4.2e-05 25.7 1.0 1 23 450 472 450 472 0.98

7 10 5.2e-05 0.0068 18.7 2.1 1 23 478 500 478 500 0.99

8 10 1.9e-06 0.00025 23.2 3.9 1 23 506 528 506 528 0.98

9 10 4.4e-05 0.0058 18.9 0.9 1 23 534 556 534 556 0.98

10 10 0.00064 0.083 15.3 3.2 1 23 562 585 562 585 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.7e-05	0.0023	20.2	2.1	2	23	286	307	285	307	0.97
2	10	1.9e-05	0.0025	20.0	0.8	3	23	315	335	313	335	0.98
3	10	5.4e-06	0.00071	21.8	0.7	2	23	342	363	341	363	0.96
4	10	3.5e-07	4.6e-05	25.5	0.4	1	23	369	391	369	391	0.99
5	10	0.00012	0.016	17.5	0.8	1	23	422	444	422	444	0.99
6	10	3.2e-07	4.2e-05	25.7	1.0	1	23	450	472	450	472	0.98
7	10	5.2e-05	0.0068	18.7	2.1	1	23	478	500	478	500	0.99
8	10	1.9e-06	0.00025	23.2	3.9	1	23	506	528	506	528	0.98
9	10	4.4e-05	0.0058	18.9	0.9	1	23	534	556	534	556	0.98
10	10	0.00064	0.083	15.3	3.2	1	23	562	585	562	585	0.96

Sequence Information

Coding Sequence: ATGGTCCGTCGTTGTATATTGTGTTGTAGTGCATCAAATACACACAAAGACCTCAGTTTCCATCAGTTTCCAAAGAATGAAATTATACGATCAATTTGGATTGACTCTTTAAGTATAAAAGAAGTTGTTAAAGACTCGCATCGAATTTGTAGTACACACTTTTCTCCAGAccattatacttttaaaaatgaacgGAAGATTTTAAAACTAGGCGCCATtccaaaaaagAAAGAAATGAAAGACGAAGTCGGAAGTTGTGGAACTTCCTTAGAACATGACGCAAATTTAATGAGTAACAgtttaattgAAGTTGATTGTTGTCCTGATATTGACATTTCAAATGAATCTGCACCAAGTACAAGTAAAaggAAAGAAGTGAAAGACGAAGTCGGAAGTTGTGAAACTTCCTTAGACCATGACGTGAATTTAATGTGTAACAgtttaattgAAGTTGATTGTTGTCCTGATATTGACATTTCAAATGAATCTGCACCAAGTACAAGTGAAagGTTAAAAAGTCTATCAAAAAACACAAAGAAAACCTATAAGgtTGTAAATAGTGAGGAAGTAACGTCACCAATAAAATCGAATAAATGTAAACGACAGACTTCGGATAAAGAAGACTCAATAAACGAAACCCCTCAATCAGTGGACAAGGACGTGGAGACATATGTTAGTAATAATTATGTCAGCGAAGACGGCGGTAAGAAATTAGAAGTTTTTGATTCTCTGGACGATCACACTTCGGAATATCGCACTATGACCGACACAGGTATCTATTCTGACCAATATTGTAATCAAACATCTAACAATGCCAATGGTGACAAAAATGTTCTCTCTGGAAACACTCCTCTCCAATGCGACTTTTGCTTTAAAACGTTTGAGTACAGATCTAATTTGCTTGTACATAGAAGAACGCACACTGGTGAGAAACCATATGGGTGCGACGTTTGTGGACTAGCATTTATGATGAAAAGTCATTTAGTTAGACATCAAAGAACGCACACCGGGGAGAAACCATGTGCATGCGATGTTTGTGGAAAATCATTTCCGGATGAAGGAACACTGGTTAAACATAAAAGAACGCACACCGGTGAGAAACCATACGAGTGCGATGTTTGTGGACAATCATTTTCGGAAAGAGGAAATTTGGTTAGGCATAAAAGAACGCATCCAACATCTAACAATGCGTACGGTGACAAAAATGTTCTCACCGGAAACACTCCTCTCCAATGCGACTTTACCGTGACAGGTAAGAAAAAATATGAGTGCGATGTTTGTGGACTAGCATTTCACATTCTAAGTAAGTTAGTTAGACATCAAAGAAAGCACACCGGAGAGAAACCATATGCGTGCGATGTTTGTGGAAAATCATTTTCGCAGCAAAATCATTTGGTTGCACATAATAGAACGCATACCGGGGAGAAACCATATGTGTGCGACGTTTGTAACCTTTCATTTtcggaaaaaaaacatttggttacACATAATAGAACGCACACTGGGGAGAAACCATATGCTTGCGATGTTTGTGGAAAATCATTTTCGCACCGACATAATTTGGTTACACATAATAGAACGCACACCGGGGAGAAACCATATGCGTGCAACGTTTGTTACCGATCATTTTCGGAAAAAGGAAGTTtagttaaacataatagaaCGCACACAGGCGAACGACCATACGAGTGCGGTCAGTGTGGAAAAAAGTTCTCAACAAGCCGTGACTGTAAAAGACATACACTAAGTGttcatatcaaaaaaaaaaaataa
Protein Sequence: MVRRCILCCSASNTHKDLSFHQFPKNEIIRSIWIDSLSIKEVVKDSHRICSTHFSPDHYTFKNERKILKLGAIPKKKEMKDEVGSCGTSLEHDANLMSNSLIEVDCCPDIDISNESAPSTSKRKEVKDEVGSCETSLDHDVNLMCNSLIEVDCCPDIDISNESAPSTSERLKSLSKNTKKTYKVVNSEEVTSPIKSNKCKRQTSDKEDSINETPQSVDKDVETYVSNNYVSEDGGKKLEVFDSLDDHTSEYRTMTDTGIYSDQYCNQTSNNANGDKNVLSGNTPLQCDFCFKTFEYRSNLLVHRRTHTGEKPYGCDVCGLAFMMKSHLVRHQRTHTGEKPCACDVCGKSFPDEGTLVKHKRTHTGEKPYECDVCGQSFSERGNLVRHKRTHPTSNNAYGDKNVLTGNTPLQCDFTVTGKKKYECDVCGLAFHILSKLVRHQRKHTGEKPYACDVCGKSFSQQNHLVAHNRTHTGEKPYVCDVCNLSFSEKKHLVTHNRTHTGEKPYACDVCGKSFSHRHNLVTHNRTHTGEKPYACNVCYRSFSEKGSLVKHNRTHTGERPYECGQCGKKFSTSRDCKRHTLSVHIKKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00941057;
90% Identity: iTF_00941057;
80% Identity: iTF_00941057;