Meup000781.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000001.1:11538921-11544899[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.4e-07 1.8e-05 26.8 1.8 1 23 199 221 199 221 0.97
2 17 0.0044 0.58 12.6 4.7 1 23 227 249 227 249 0.98
3 17 0.0017 0.22 13.9 2.2 1 19 255 273 255 277 0.94
4 17 0.0021 0.28 13.6 5.2 1 23 283 306 283 306 0.96
5 17 1.3e-06 0.00016 23.8 4.0 1 23 312 334 312 334 0.99
6 17 6.7e-06 0.00087 21.5 5.0 2 23 341 362 341 362 0.97
7 17 7e-05 0.0091 18.3 1.3 1 23 368 390 368 390 0.98
8 17 0.0067 0.88 12.0 0.6 1 23 396 418 396 418 0.96
9 17 1.3e-05 0.0017 20.6 1.2 1 23 424 446 424 446 0.98
10 17 0.033 4.3 9.9 6.0 1 23 452 474 452 474 0.99
11 17 0.00042 0.055 15.8 2.9 1 23 480 502 480 502 0.98
12 17 4.5e-05 0.0059 18.9 2.8 1 23 508 530 508 530 0.99
13 17 2.1e-06 0.00027 23.1 1.0 1 23 536 558 536 558 0.99
14 17 0.00066 0.087 15.2 5.4 1 23 559 581 559 581 0.98
15 17 0.002 0.27 13.7 0.7 1 23 587 609 587 609 0.99
16 17 0.046 6 9.4 2.5 3 23 618 639 616 639 0.95
17 17 6.8 8.8e+02 2.6 0.8 1 23 644 666 644 666 0.94

Sequence Information

Coding Sequence
ATGAACAATATGGaacatttaaattcaaaatACAAGAATTTTCCtaaattcgataaaatattaaaagtgtcACTTGTAAATTGTGATCATCTAttgaaatttcataataaacaaataatcaaaGAAAAAATGAATGAATTTGAAGACGTTGATAACACAACCAAAGAAGATGATTTTCTtcaaAAAGTTACACAAGAAGACAATGATATTAAGAAGAATGCTATTTCGCaaataaaacatcaaaatattcataaaaaaaatgagaaagGAACTATTCAAGTAAATTCATTTAATTCTAAAGAAAATATTGAGACTACTAAATTTGACGATGGAGTTGACCGTGATGATGAGATGGAACATAGCAGCATTATTGAAATTAAGCCTAAAAGATCACAGTTAAAGTTATTTGATATCAAATCTGAGAAAAATACTTCTAATTGCCGTCTCTGTAAATTACCTTTAGATTTATGCAAACACCAgaaatcacataaaaaaaatcacgaaaaattgTATAAACCTATGAACTCACAATCCACATTTTCTGAAGAATTACACTTAACTAAGAATACCAAGACACCTGAACagaaaaaaacttttgattGCAAGTACTGCAATAAGATGTTTACTGTGAAGTCAAATTTAACGGTTCATATAAGAAGTCACACCGGtgaaaaaccatatttttgtGACTTGTGCAAAAGATCTTTTGCTCAGAGACAAAATATGATGTGTCATATGAGAACCCATACGGGATATAAACCTTATTCATGTGGAATTTGTAAAAGGAAATTTAGCCATAAGTCATTATTAGACAACCATGAATGGAAACACACTGGTATTAAACCATTTAAGTGTGAAATATGTGTTAGAGAATTTTCTCGGAAATCGTGTTTAGTTTATCATCAAAACCACAGTCACACAGGTGAAAAACTTTTTAAGTGCAATGTTTGTGACAAAGTCTTTTTCAGAGAATCATTTTTGAAGCATCATATGAGAGTCCATATGACTATGCAATTAGAAAAGTGCCATATTTGTGATAAAACATATACTCATAAATCAAGTTTACGAAGACATTTGGTGGTCCATTCTGGTGAAAAGGTGTTTGAATGTGGTATGTGTAGGAGATCCTTTCATCGGCGATCAGGTTTAATAGACCACATAAAAGTTCATATGACAAACAGACCTTTTGAATGCAGTCTCTGCAGATCAACATTTCCTACATTATCAGAACTAGAAAGTCATTCAACATCTCACATCTATAATGATTCATTTCAATGCCATCTTTGTGATGCAAGTTTTATATCAAAATCACTTTTAGATACTCATATGTTATCTCATGCTGGAAATAGAACATTTCAGTGCCATCATTGTTTAGCAACATACGTCCAAAGGAAAAGTTACATTTACCATTTAAAAACTCACAAAGATCatgaaatgtataaatgtaattggtgtaaaatgtcattttttcaaaaaaataagcTAATTGATCATTTAAGATTTCATACTGGTGAGAGAACTTTTAAATGCCCCGATTGTAACAAAAGATTTTTGCATAAAGCTGTTTTACAGACACATATGAGAAGTCAcgttattgaacaaaaatataaatgtgacaTATGTAGAGTAgtctttaaacaaaaattaaatttaattaaacacataaaaaccCATTTTAGGTGTAGATTTTGTAAGACTTCCTTTTTCCAAAAATCTACCTTTATTTCTCATATGAAAATGCATCCTAAAAACAATCCTTATAAATGTAGTGTATGTGGTATTTCATATCTACAGAAAACTGACATGATTAAACATGAAAAGACTCATATGATTGAAAAGGCTTTACTGTTTTGTAAAGTATGTAATCAATCTTTTTCTTCAAAACTAAAACGTATTAATCACGAAAGAAAATTTCACACTGAAGCAGCATATTACTGTATAATctgttataaattgttttttgaaaaaaagcaAATAGCACTACATATTAAATTGCATATGAAGAACATGCCATCTAAATGTTTGGGTTGTAAAGAACCATTGTTACAAGTACCTGTTTCGGCTAAAGTATTAAGAGagataattctaaataaaaaaaatatatgtgacGTGTGTTCTGTCATCTTCTAA
Protein Sequence
MNNMEHLNSKYKNFPKFDKILKVSLVNCDHLLKFHNKQIIKEKMNEFEDVDNTTKEDDFLQKVTQEDNDIKKNAISQIKHQNIHKKNEKGTIQVNSFNSKENIETTKFDDGVDRDDEMEHSSIIEIKPKRSQLKLFDIKSEKNTSNCRLCKLPLDLCKHQKSHKKNHEKLYKPMNSQSTFSEELHLTKNTKTPEQKKTFDCKYCNKMFTVKSNLTVHIRSHTGEKPYFCDLCKRSFAQRQNMMCHMRTHTGYKPYSCGICKRKFSHKSLLDNHEWKHTGIKPFKCEICVREFSRKSCLVYHQNHSHTGEKLFKCNVCDKVFFRESFLKHHMRVHMTMQLEKCHICDKTYTHKSSLRRHLVVHSGEKVFECGMCRRSFHRRSGLIDHIKVHMTNRPFECSLCRSTFPTLSELESHSTSHIYNDSFQCHLCDASFISKSLLDTHMLSHAGNRTFQCHHCLATYVQRKSYIYHLKTHKDHEMYKCNWCKMSFFQKNKLIDHLRFHTGERTFKCPDCNKRFLHKAVLQTHMRSHVIEQKYKCDICRVVFKQKLNLIKHIKTHFRCRFCKTSFFQKSTFISHMKMHPKNNPYKCSVCGISYLQKTDMIKHEKTHMIEKALLFCKVCNQSFSSKLKRINHERKFHTEAAYYCIICYKLFFEKKQIALHIKLHMKNMPSKCLGCKEPLLQVPVSAKVLREIILNKKNICDVCSVIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-