Meup022411.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000002.1:50107155-50111310[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0053 0.69 12.4 0.3 5 23 329 347 328 347 0.93 2 17 0.021 2.8 10.5 0.4 1 23 353 375 353 375 0.97 3 17 6.8 8.9e+02 2.6 0.5 1 21 470 490 470 492 0.91 4 17 0.00013 0.017 17.5 1.9 1 23 556 578 556 578 0.99 5 17 0.039 5.1 9.6 3.7 1 23 592 614 592 614 0.98 6 17 8.7e-05 0.011 18.0 2.7 1 23 619 641 619 641 0.96 7 17 0.00039 0.051 15.9 5.0 1 23 647 669 647 669 0.97 8 17 0.0036 0.48 12.9 4.9 1 23 675 697 675 697 0.97 9 17 0.0017 0.22 13.9 0.5 1 23 703 725 703 725 0.98 10 17 0.00041 0.054 15.9 4.1 1 23 731 753 731 753 0.98 11 17 0.0022 0.29 13.6 2.0 1 23 758 780 758 780 0.98 12 17 1.1e-05 0.0014 20.9 2.4 1 23 786 808 786 808 0.98 13 17 0.00034 0.044 16.1 0.1 1 23 814 837 814 837 0.98 14 17 4.8e-05 0.0063 18.8 1.3 1 23 837 859 837 859 0.97 15 17 2.6e-05 0.0034 19.6 1.1 1 23 867 889 867 889 0.98 16 17 8.4e-05 0.011 18.0 3.4 1 23 895 917 895 917 0.99 17 17 0.00018 0.024 17.0 0.7 1 23 923 946 923 946 0.95
Sequence Information
- Coding Sequence
- atggaGTTCAACAAACCAGACCCACTGAAGATGACGGGTAACTTGGCtgaaaattttcgaaatttcaGATATCAactacaaatgtattttaatgcAACTGAATGTCATTCAAAAGAGGAAGCTACGCAAGTGGCAATATTATTAGACCTTTTGGGGTCggattgtttaaaaatttacaacACTCTCAAAATTCCCAGTATAActgtatttgaaattttgaaagcGTTGGAGGCTTATTGCATACCGCCAAGACGTAATGAAACTATGcaacaatacaaattttttacaCGGAAACAACTCGATGGTGAGccatttaataagtattatgcGGATCTTCGAGAATTGGTTAAGTCATGTGAGCTTAATACCTgtgacaaattattaaaaattcaaatcattCTGGGAATATCTGATAAAGAATTACAAGCAAGGTTATTGCGAGACGAATTAACTTTAGAAAAAACTGTTAAGCACTGTCAAATAGTGGAAGAGTCTAAAGTCAATCGTAAACTTATCCAGGAAAACACAAAAAAACTTCTCAACATTGAGGCAGAGCAACATAAGGGGTCAAATCAGTATAGCAGAGGAGTCAAGTCTAATTTTCGAAAACCAACTCAACATAAGCAGTCAAATGGAAAAGGTGATGGAAAGtttaaaaatataatggagaAACATATAGAtctacaacataaaaatattaaaattgagatGGAAGACAACAATGAAGAAGAATTTACTGATATTGGAtacaatattgacaaaaataaacataaaaacactAATTTtcggAATGTTAGTGTTAATAAAGAAAccaattcaataattaaaactgaaaaagatGAAACAGTATTTAACGATTGTGTGTTTGAAagcaaaattgaaattgaaatggTTCATGCTACCGATCCAATAGAAAATTGTAACAATCCTAATCCCACTGTTGGTGGACAGATGGACAATCGTGAAAAGGAATACCAGTACAACATATGTAATAAGAGTTTTCAAGACAAAAACAACTTAGAAGTTCACAAATCACTTCATGCAAATATCAAGAAGTTTAATTGTATGACTTGCGGTGAGCAGTTTTTTGAATTGAATGGTCTTAAAACACATTTGATGGTTcataaagacaataatataaaattgcttGAAAATCAATTTACTCAAGAGTGCAATGATGTTGGTGatagtaatagtaatttatggACTGTTGTAGTTAATAACGAAACCAATACAATAATTGAAACTGAACAAGATGAAACAGTATTTAATGATTGTGTGTTTGACAGCGAAACTGAAATTGAAATGGCTCATGCTACCGATCCAATAGAAAATTGTAACAATCCCAATCCCACTGAACACGAAATGGAAATTGGAATtgaaaaagaatataaaaatgatgaaatGTATAATTGCGCAAAATGCAGTTTACAATTTCATGATCGTCCAAGTATTATAGATCATCTAAATCCTCATATCGATCAATGTATCAACTGTTGCAAGTACATTGGTAGTCCGACTTCTTGTAAATATCCTGTTAGCATCCAAGAACATCCAAGAacatcattttattttgaatgtgaAGAATGTTACAATGAGTTTTATACACTCAAGAGCTTTGAGAGATATCTAAGTGCGCAGAGTAATAAAAAAACAGACAGACCATACAAATGTGATATTTGtctaaaaacatatataaatttatatcacTTTGCTGCTCATCAACGATTACATAAAGAAGCTCACATGTTTTTACATCAAATTGTCAACAGATATAAATGCTCGTTGTGTTCAAAAAAGTTCcttaaattaaagtatttcaaaatcCATATGTTGTCTCATGACTCATACATACATAAGTGTAAAAAGTGTGGAGAAGAATTTAGATCGTTGACTTTGTTGCAGAAACATCAGGATCTCCATCCTCGATACAGACCATACAAATGTATTACATGTGACAAGTCATTTTCAAGGCATAATTCTCTTACACAACATTTAAAAAGGCATGAAGGTTTAAAACCATATCAATGTACTAAGTGTGATGAGAGTTTTAGCACTTGGTTTGATTTTAATTGCCATAAAAGACTACACAAAGGTGAAAAGCCTTATGAATGTGATATCTGTGGAGATCAGTTTAGTCAATTAACTGATTGGAAAAgacataaaaaattacatattgaaaataaaaattttgaatgcAACGAGTGCCATAAAAAGTTTGCTAgtaaaaattatgtaagtaatCATTTGAAAAGACACTTAGAAAAGAATTATAAATGCAAAGTTTGTAACAAATATTTCAAAGCAATTAGGAGTTTGaatgaacataaaaaaattcataaagaCTTTAAACCATATGTTTGTAACATATGTAAAAAGAGATTTGTTTCTcgttataattatactaatcACTTAAATCAACACACAGGTGCAAGACCATTCGTGTGTGATTTATGCGGAAAAGCATTTCCAGCTCGTGTACCTCTGAATAGgcataaaaaaacaaatcatacatgttatatttgtaataaattcttCAATGACCCCAAAGAACTTAATGTTCACAAGATTACTCACGAAGAATTTAAACTGAAGCATTATGCGTGCAAATTGTGTGAcaaagcatttaaaaatcaactAACTTTGGACCGACATCAATCAACTCATCAGGTCGAAAAACCATTCAAGTGCGACTTTTGTCCCAAGGCTTTTACAAGAACTGATTGTCTGGTAATTCATAGAAGAAAACATACCGgtgaaaaaccatttaaatgcGATTTATGTAAGAAGACATATCCCCGATTTGGTTCACTAACTCGACACGAAGCCATGGTACACAATAAGTAA
- Protein Sequence
- MEFNKPDPLKMTGNLAENFRNFRYQLQMYFNATECHSKEEATQVAILLDLLGSDCLKIYNTLKIPSITVFEILKALEAYCIPPRRNETMQQYKFFTRKQLDGEPFNKYYADLRELVKSCELNTCDKLLKIQIILGISDKELQARLLRDELTLEKTVKHCQIVEESKVNRKLIQENTKKLLNIEAEQHKGSNQYSRGVKSNFRKPTQHKQSNGKGDGKFKNIMEKHIDLQHKNIKIEMEDNNEEEFTDIGYNIDKNKHKNTNFRNVSVNKETNSIIKTEKDETVFNDCVFESKIEIEMVHATDPIENCNNPNPTVGGQMDNREKEYQYNICNKSFQDKNNLEVHKSLHANIKKFNCMTCGEQFFELNGLKTHLMVHKDNNIKLLENQFTQECNDVGDSNSNLWTVVVNNETNTIIETEQDETVFNDCVFDSETEIEMAHATDPIENCNNPNPTEHEMEIGIEKEYKNDEMYNCAKCSLQFHDRPSIIDHLNPHIDQCINCCKYIGSPTSCKYPVSIQEHPRTSFYFECEECYNEFYTLKSFERYLSAQSNKKTDRPYKCDICLKTYINLYHFAAHQRLHKEAHMFLHQIVNRYKCSLCSKKFLKLKYFKIHMLSHDSYIHKCKKCGEEFRSLTLLQKHQDLHPRYRPYKCITCDKSFSRHNSLTQHLKRHEGLKPYQCTKCDESFSTWFDFNCHKRLHKGEKPYECDICGDQFSQLTDWKRHKKLHIENKNFECNECHKKFASKNYVSNHLKRHLEKNYKCKVCNKYFKAIRSLNEHKKIHKDFKPYVCNICKKRFVSRYNYTNHLNQHTGARPFVCDLCGKAFPARVPLNRHKKTNHTCYICNKFFNDPKELNVHKITHEEFKLKHYACKLCDKAFKNQLTLDRHQSTHQVEKPFKCDFCPKAFTRTDCLVIHRRKHTGEKPFKCDLCKKTYPRFGSLTRHEAMVHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -