Meup020873.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:42530929-42547157[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3.8 5e+02 3.4 0.3 12 23 197 208 190 208 0.85
2 15 2.2e-06 0.00029 23.0 0.6 1 23 214 236 214 236 0.99
3 15 0.0004 0.053 15.9 1.8 1 23 242 264 242 264 0.99
4 15 0.004 0.52 12.8 0.9 1 23 270 292 270 292 0.97
5 15 6.3e-07 8.2e-05 24.7 3.2 1 23 298 321 298 321 0.98
6 15 0.0032 0.42 13.0 1.0 1 23 327 349 327 349 0.99
7 15 0.0016 0.21 14.0 1.5 1 23 355 377 355 377 0.97
8 15 1.1e-05 0.0015 20.8 0.5 1 23 383 406 383 406 0.97
9 15 0.0056 0.74 12.3 0.9 1 23 412 434 412 434 0.98
10 15 0.00026 0.033 16.5 1.1 1 23 440 462 440 462 0.99
11 15 0.00026 0.033 16.5 1.1 1 23 468 490 468 490 0.99
12 15 0.00084 0.11 14.9 1.4 1 23 496 518 496 518 0.99
13 15 0.00012 0.016 17.5 4.1 1 23 524 546 524 546 0.99
14 15 1.3e-05 0.0017 20.6 3.4 1 23 552 574 552 574 0.98
15 15 4.5e-08 5.8e-06 28.3 0.7 1 23 580 602 580 602 0.99

Sequence Information

Coding Sequence
ATGGAACCACCCAGAACATTTTTTGATGATTGTGCGATTAATTCCAATTCTAGAGTGGTGCCATTACCAATGAATGTGATATGTGGTAATCAAGCATTTAATGCAAATACTAAACAGGAATATGCTGATGATCAAGTATTATATGGAACTGTTAAAGAGGAAGTAATGGAGGAAACAGATCATCACAATGAGaatcaattattacaaaaaggagtgaCACCAAACAGTTCTAGAGTGGTGCCATTACCAATGAATGTGATATGTGGTAATCAAGCATTTAATGCAAATACTAAACAGGAATATGTTGATGATCAAGTATTTTATGGAACTGTTAAAGAGGAACTAATGGAGGAAACAGATCATCACAATGAGaatcaattattacaaaaaggaactaaAACTGAAGATGAAGTAAACGCAAGTGATACCGAAATTAAATCTGAGGTAGATTTTACTGAATGTTGTGAATTTGTAGGAAGTGTTTTGAAGGTAAGCAACTCTTCAGAAATTTTTTCGGATATGAATTTGGACACGACATCTAACTGCTCAAGGAAAAATCCATTGACCGATAACTGCGATAAAATGCCATCAGCACACTATTTAACTGTTCATACTAGGACACATACACACGAAAAGCCGTATAAATGTGATAGATGTGATCAAGCATTTCCTCTGAAATCAACTTTAATAAGCCATATGAGGACACATACCTGGGAAATGCCGTATAAATGTGATAACTGTGATGCAAGGTTTGTTAAAAAACAAGCCTTAAAATATCATTCAAAGACACATACCGGTGTAAAGCCGTATAAATGTGACAACTGTGATGGAAGATTTATTACAAAACAAGGCTTAAAATATCATTCAGTGACACATACCGGTGTAAAGCCgtataaatgtgataaatgtgACAAAGCGTTTTATCGAAGATCATGTTTAATAAGCCATATAAGGACGGTACATACCGGTAAAAAGCCGTATAGATGTGATATCTGTGCTGCAaggtttattaaaaaacaagcCTTAAAATATCATTCAAAGACACATACCGGTGTAAAGCCGTATAAATGTGACAACTGTGATGGAAGATTTACTACAAAACAAGGCTTAAAATATCATTCAGTGACACATACCGGTGTAAAGCCGTATAAATGTGATAACTGTGACAAAGCGTTTTATCGAAGATCATATATAATAAGCCATATAAGGGGGGTACATACCGGTAAAAAGCCGTATAAATGTGATATCTGTGATGCAAGGTTTCTTAATAAACAAGgattaaaatatcattcaatGACCCACACCGGTGTAAAGCCGTATAAATGTAACAACTGTGATGGAaggtttattacaaaacaaGGATTAAATAATCATTCAATGACACACACCGGTGTAAAGCCGTATAAATGTAACAACTGTGATGGAaggtttattacaaaacaaGGATTAAATAATCATTCAATGACACACACCGGTGTAAAGCCGTATAAATGTGACAACTGTGATGCAaggtttattaaaaaacaaggattaaaatatcattcaatGACACACACCGGTGTAAAGCCGTATAAATGTGACAACTGTGATAGAAGGTTTATTACAAAACATGgattaaaatatcattcaatGACACATATCGGTGCAAAGCCATTTAAATGTGATACATGTAATAAGGAGTTTTATAGaaagtcaaaattaaatgaGCATTATAAGATACATACAGTAGACAAGATATACAAATGTGATATCTGTGGAAAAGGGTTTGctctaaattcatatttaaaaaagcaTATACGGACACATACCggaaaaagtacttaa
Protein Sequence
MEPPRTFFDDCAINSNSRVVPLPMNVICGNQAFNANTKQEYADDQVLYGTVKEEVMEETDHHNENQLLQKGVTPNSSRVVPLPMNVICGNQAFNANTKQEYVDDQVFYGTVKEELMEETDHHNENQLLQKGTKTEDEVNASDTEIKSEVDFTECCEFVGSVLKVSNSSEIFSDMNLDTTSNCSRKNPLTDNCDKMPSAHYLTVHTRTHTHEKPYKCDRCDQAFPLKSTLISHMRTHTWEMPYKCDNCDARFVKKQALKYHSKTHTGVKPYKCDNCDGRFITKQGLKYHSVTHTGVKPYKCDKCDKAFYRRSCLISHIRTVHTGKKPYRCDICAARFIKKQALKYHSKTHTGVKPYKCDNCDGRFTTKQGLKYHSVTHTGVKPYKCDNCDKAFYRRSYIISHIRGVHTGKKPYKCDICDARFLNKQGLKYHSMTHTGVKPYKCNNCDGRFITKQGLNNHSMTHTGVKPYKCNNCDGRFITKQGLNNHSMTHTGVKPYKCDNCDARFIKKQGLKYHSMTHTGVKPYKCDNCDRRFITKHGLKYHSMTHIGAKPFKCDTCNKEFYRKSKLNEHYKIHTVDKIYKCDICGKGFALNSYLKKHIRTHTGKST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-