Meup006684.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000001.1:81841728-81844228[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.6e-06 0.0006 22.0 1.7 1 23 125 147 125 147 0.97
2 16 0.00082 0.11 14.9 3.8 1 23 378 400 378 400 0.99
3 16 5.4e-05 0.007 18.6 3.1 1 23 406 428 406 428 0.98
4 16 0.019 2.5 10.6 3.9 1 23 434 456 434 456 0.98
5 16 2e-05 0.0026 20.0 1.9 1 23 461 483 461 483 0.96
6 16 3.3e-05 0.0043 19.3 1.9 1 23 489 511 489 511 0.98
7 16 1.6 2.1e+02 4.5 7.7 1 23 517 539 517 539 0.97
8 16 0.00055 0.072 15.5 1.2 1 23 545 567 545 567 0.99
9 16 0.00013 0.018 17.4 3.6 1 23 573 595 573 595 0.98
10 16 2.7e-06 0.00035 22.7 1.3 1 23 602 624 602 624 0.98
11 16 1.5e-05 0.002 20.3 3.8 1 23 630 652 630 652 0.98
12 16 0.00048 0.063 15.6 0.2 1 23 658 681 658 681 0.98
13 16 3.4e-05 0.0044 19.3 1.6 1 23 681 703 681 703 0.97
14 16 7.7e-07 0.0001 24.4 0.6 1 23 711 733 711 733 0.98
15 16 0.00074 0.096 15.1 0.4 1 23 739 761 739 761 0.98
16 16 4.6e-05 0.006 18.9 0.7 1 23 767 790 767 790 0.95

Sequence Information

Coding Sequence
atggaaaaacttatagatatacaacataaaaataataaaattgagacTGATTACACTCAACAATTAGTAAGTAAtgatattagtattaaaaatgaGATAGAAGACAACAATGAAGAAGAATTTACtgatattgacaaaaataaacataaaaacccAAATGtttggACTGTTAGTGTTAATGAAgaaactaatacaataattaaaactgaaaaagatGAAACAGTAGTTAACGATTGTATGTTCAAAAGCGAAATGGAAATTGAAATACTAagaagtataaataaaaaaaaagctcatGTTATCAATCCAATAGAAAATTGTAACAATCCTAAACCCACTGTTGGTGGAAGGATACACAATCTTGAAAAGGAATACCAGTGCAACATATGTAATAAGAGTTTTCAAAACAGATACAATTTAGAAGTTCACAAATCACTTCATGTAAATATCAAGAAGTTTAATTGTATATCTTGCTGTGAGCAGTTTTTTGAATTGAATGGTCTTAAAAGCCATTTGATATCTcatatagacaataatataaaattgtttgaaaatcaatttattcaaGAGTGTAATGATGTTGGTGATTGTAACAGTAATTTATGtaataacaTTACTATGCTTGATGGATTGAAGACAAGTCATTCCGAAGGCGAAGATCCAATTCAAAAGAGAACAATTAACAAAGTTCAGTTAGAGTTTTCAgtagaaattgaaaatattttattaaccaaAGAGTGTAGtatcaattcaaatttaactgtTGGAAATGCAGTTGATTCTTGTGCCCCAGTAAATCGTAAACATATTAGTTTGGATGAATCGAACGCTGCAAATTCAGTTGgtcaaatagaatataaaaatgatgaaatgtataattgtgCAAAATGCAGTTTACTATTTCATGATCGTCCAAGTATTATAGATCATCTAAAACCTCGTATCGATCAATGTATCAACTGTTGCAAGTACATTGGTAGTCCGAATTCTTGTAAATATCCTGTTAGGTTCCATCCAGGAAcaccattttattttgaatgtgaAGAATGTTACAATGGATTTTATACACTCAAGagctttgaaaaatatttaagtgatgAAGTGatacgtaataaaaaaaaagacagaCCATACAAATGTGATGTTTGTctaaaaacatatatacatttatatcacTTTGCTGCTCATCAACGATTACATAAAGGTGAGAGACCATACCAGTGTAACATTTGTAATAAACGTTTTCACGCCAAATTTAATTTAGAAGCTCACATGTTTTCACATGAAATTATCAAGAGATATAAATGCTCGCTGTGTTCAAAAAAGTTCCTTAAATCAAAGTATTACAAAATCCATATGTTGTCTCATGACTCAAACATACATAAATGTAACATGTGTGGAAAAGAATTTGTATCGTTGAATTCTTTGCAGAAACATCAGGATCTCCATTCTGGATACAGACCATACAAATGTATTGAATGTGGCAAGTCATTTTCAATGAATAAATCTCTTACACAACATTTAAAAAGGCATGAAGGTTTAAAACCATATCAATGTACTCTATGTGATGAGAGTTGTAGcacttattttgattttaagtgCCATAAAAGACTACACAAAGGtgaaaagccttataaatgtgatatcTGTGGAGATCAGTTTACTCAATTAACTGATTGGAGAAGACATAAAAAATCACATTATGAGCATAAAAATTTTGAATGCGACAAGTGCCATAAAAAGTTTGTTAGTAAAACTGGTGTTAAAAATCATTTGCAAACACACTtagaaactattaaaaaatataaatgcaaagTTTGTAACAAAAGTTTCTCGCAAAATGCTCAATTGTATGAACATGAAAAAATTCATAAAGACTTTAAACCATATGTTTGTAACATATGTAAAAAGAGTTTTATTTCTCGTCATAATTATACTAATCACTTAAATCAACACACAGGTGCCAGACCATTTGTGTGTGATTTATGTGGAAAAACGTATCCAGCAATTGTATCTCTGAATAGgcataaaaaaacaaatcatacatgtgatatttgtaataaattctaCAGTGACCCCAAAGAACTGAAGGTTCACAAGACTACTCACGAAGAATTTAAACTGAGGCAGTATGCGTGCAAATTGTGTGAcaaagcatttaaaaatcaacaagCTTTGGAAAAACATCAATTAACTCATCTAGTTGAAAAACCGTTCAAGTGTGACCTTTGTCCCAagtcttatataaatattactgttCTGACAGTTCATAGAAGAAATCATACTGGTGAAAGACCATATAAATGCGAACTATGTAATAAGACATATCCCCAAATTAGTTCACTAACTCGACACAAAACCattgtacacaataaataa
Protein Sequence
MEKLIDIQHKNNKIETDYTQQLVSNDISIKNEIEDNNEEEFTDIDKNKHKNPNVWTVSVNEETNTIIKTEKDETVVNDCMFKSEMEIEILRSINKKKAHVINPIENCNNPKPTVGGRIHNLEKEYQCNICNKSFQNRYNLEVHKSLHVNIKKFNCISCCEQFFELNGLKSHLISHIDNNIKLFENQFIQECNDVGDCNSNLCNNITMLDGLKTSHSEGEDPIQKRTINKVQLEFSVEIENILLTKECSINSNLTVGNAVDSCAPVNRKHISLDESNAANSVGQIEYKNDEMYNCAKCSLLFHDRPSIIDHLKPRIDQCINCCKYIGSPNSCKYPVRFHPGTPFYFECEECYNGFYTLKSFEKYLSDEVIRNKKKDRPYKCDVCLKTYIHLYHFAAHQRLHKGERPYQCNICNKRFHAKFNLEAHMFSHEIIKRYKCSLCSKKFLKSKYYKIHMLSHDSNIHKCNMCGKEFVSLNSLQKHQDLHSGYRPYKCIECGKSFSMNKSLTQHLKRHEGLKPYQCTLCDESCSTYFDFKCHKRLHKGEKPYKCDICGDQFTQLTDWRRHKKSHYEHKNFECDKCHKKFVSKTGVKNHLQTHLETIKKYKCKVCNKSFSQNAQLYEHEKIHKDFKPYVCNICKKSFISRHNYTNHLNQHTGARPFVCDLCGKTYPAIVSLNRHKKTNHTCDICNKFYSDPKELKVHKTTHEEFKLRQYACKLCDKAFKNQQALEKHQLTHLVEKPFKCDLCPKSYINITVLTVHRRNHTGERPYKCELCNKTYPQISSLTRHKTIVHNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-