Meup030551.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000003.1:25582486-25586210[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.015 17.6 1.7 1 23 147 169 147 169 0.97
2 18 8.9 1.2e+03 2.2 0.0 10 21 219 230 216 231 0.82
3 18 0.00011 0.015 17.6 1.7 1 23 240 262 240 262 0.97
4 18 8.9 1.2e+03 2.2 0.0 10 21 312 323 309 324 0.82
5 18 4.7e-05 0.0061 18.8 1.4 1 23 333 355 333 355 0.97
6 18 2.3e-06 0.0003 23.0 1.2 1 23 368 390 368 390 0.97
7 18 0.00034 0.044 16.1 1.7 1 23 396 418 396 418 0.97
8 18 4.3e-07 5.7e-05 25.2 2.7 1 23 424 446 424 446 0.99
9 18 7.8e-08 1e-05 27.6 1.0 1 23 452 475 452 475 0.96
10 18 3.8e-06 0.0005 22.3 3.3 1 23 481 503 481 503 0.99
11 18 0.00063 0.082 15.3 0.9 1 23 509 531 509 531 0.99
12 18 0.00012 0.016 17.5 2.8 1 23 537 559 537 559 0.98
13 18 3e-08 3.9e-06 28.9 2.1 1 23 565 587 565 587 0.99
14 18 1.4e-07 1.8e-05 26.8 0.7 1 23 593 615 593 615 0.98
15 18 0.0053 0.7 12.4 9.5 1 23 621 643 621 643 0.98
16 18 6.1e-09 7.9e-07 31.1 1.5 1 23 649 671 649 671 0.99
17 18 1.3e-06 0.00018 23.7 2.6 1 23 677 699 677 699 0.99
18 18 0.024 3.1 10.3 0.2 1 13 705 717 705 720 0.88

Sequence Information

Coding Sequence
ATGATTTTGCAtaatacatCGAAAACTGAAAAAGAAGTAAACCCaactaatatcaatataaaaactgaaaaagatATTATTGAGGCAAGTACATTTGATAGATCCGTTCTCAATGAAAACTACACTTTGGAAATCATCGATCGTTTGAATTCAAGCGATAATTTAAGAGAAAATACTTTAACATCCAATACACAAAATTTGACTAGATATAAAAAGATTCAACTTCGTGAAACAGATGAGgctaatatcaatataaaaactgaaaaagatATTATTGAGGCAAGTACATTTGATGGATCCGTTCTCAATGAAAACTACTCTTTGGAAATCATCGATCGTTTGAATTCAAGCGATAATTTAAGAGAAAATACTTTAACATCCAATACACAAAATTTGACTAGATATAAAAAGATTCAACTTCGTGAAACGGATGAGGCATTCATTTGTGCaatgtgtaataaattattctacaaaaagtcacttttaaaaaaacacatactgCGTCATAAAACGGATGAGgctaatatcaatataaaaaatggaaaagaTATAATTGAGGCAAGTACATTTGATGGATCCGTTCTCAATGAAGACTACTCTTTGGAAATCACCGATCGTTTGAATTCAACCGATAATTTAAGAGAAAATACTATAACATCCAATACAGCGAATTTGACTAGACATATCAAGATTCAACTTCGTGAAACGGATGAGGCATTCATTTGTGCaatgtgtaataaattattctacaaaaagtcacttttaaaaaaacacatactgCGTCATAAAACAGATGAGgctaatatcaatataaaaactgGAAAAGATATGATGGAGGCAAGTACATTTGATGGATCCGTTCTCAATGAAGACTACTCTTTGGAAATCACCGATCGTTTGAATTCAACCGATAATTTAAGAGAAAATACTATAACATCCAATACAGCGAATTTGACTAGACATATCAAGATTCAACTTCGTGAAACGGATGAGGCATTCATTTGTgcaatatgtaataaattattctacaaaaagtcacttttaaaaaaacacatactgCGTCATAAACTTGAAAATAGCTATAAAAATAGACTTCTGTGTTATAACTGTAATATTTGCGGTAAAAAGTTTTCTCAATTTGAACTTCTTGAAACCCATATAAGATTTCATACTGAAGAAAAACCACATGTATGTGATTTCTGTAATAAACAGTTTCCTACAACATCAGGTTTAAAATTGCACAGAATGATACATACTGGAGAGAAGCCGTATAAATGTCTAATCTGTGACAAACAATTTTATCAAAGATCAGATTTAAATAGGCATACAAGGACACacactggagaaaaaccgtataaatgtaatatttgcgGTAAAAGCTTTTCGACatctcaaaatttaaaagtgcaCACCACAATGATTCATACGGGTGAAAGGCcctataaatgtaatttatgtgaTAAAGCGTTTTGTCGAGCAgtagatttaaaaaaacattcgaAGACGCATACCGCTGAAAAGCCATATAAATGTGAAGTCTGTGACAAGAGATTTGCCCTTGGACAACGTTTAAGAGATCATACCAGGACACATACTGGGGAAAAACCGTTTATGTGTGATATTTGCGATAAAAGGTTTTCTTTGGCAAGATGTTTAAAAATGCACAGAAGGATACATACTGGAGAGAAGCCATATAAATGTCCAATCTGTGACAAACAATTTTATCAAAGATCAGATTTAAATAGGCATACAAGGACACATAGCAATGATAAACCATATATCTGTAATATCTGTAAAAAAGGGTTTTCTCAATCGGAACAATTAAAAAGGCACATGATCATGCACTCTGCTGAAAAGCCCTTTAAATGTAAATGCTGTGATAGATGCTTTTctcttttaaaaaatttaaaacgacaTACAAGGACACACATTGGAGAAAAACCGTATAAATGTGATAATTGCGGTAAAAGCTTTTCGAcatcatcaaatttaaaagtgcaCACAAGGATTCATACGGGTGAAAGGCcctataaatgtaatttatgtgaTAAAGCGTTTTGTCAAGCAGTAGATTTAAAAAAGCATACCATGACACACACCAAAGATAAACCACATAAATGCGATATCTGTAACAAGGGGTTTTCTCAGAAAcAATTGATATCATTTTCACTCGGTCAATTGCAACACAAACAACCAATCAAAATTACGCTGGGGTCGGCCGACGCGTGTAAATACGGGTGCGTTCGACCGATCGAGATCCAGTCTTTCTCCAAACTTCCAAAACGTCAACATTAG
Protein Sequence
MILHNTSKTEKEVNPTNINIKTEKDIIEASTFDRSVLNENYTLEIIDRLNSSDNLRENTLTSNTQNLTRYKKIQLRETDEANINIKTEKDIIEASTFDGSVLNENYSLEIIDRLNSSDNLRENTLTSNTQNLTRYKKIQLRETDEAFICAMCNKLFYKKSLLKKHILRHKTDEANINIKNGKDIIEASTFDGSVLNEDYSLEITDRLNSTDNLRENTITSNTANLTRHIKIQLRETDEAFICAMCNKLFYKKSLLKKHILRHKTDEANINIKTGKDMMEASTFDGSVLNEDYSLEITDRLNSTDNLRENTITSNTANLTRHIKIQLRETDEAFICAICNKLFYKKSLLKKHILRHKLENSYKNRLLCYNCNICGKKFSQFELLETHIRFHTEEKPHVCDFCNKQFPTTSGLKLHRMIHTGEKPYKCLICDKQFYQRSDLNRHTRTHTGEKPYKCNICGKSFSTSQNLKVHTTMIHTGERPYKCNLCDKAFCRAVDLKKHSKTHTAEKPYKCEVCDKRFALGQRLRDHTRTHTGEKPFMCDICDKRFSLARCLKMHRRIHTGEKPYKCPICDKQFYQRSDLNRHTRTHSNDKPYICNICKKGFSQSEQLKRHMIMHSAEKPFKCKCCDRCFSLLKNLKRHTRTHIGEKPYKCDNCGKSFSTSSNLKVHTRIHTGERPYKCNLCDKAFCQAVDLKKHTMTHTKDKPHKCDICNKGFSQKQLISFSLGQLQHKQPIKITLGSADACKYGCVRPIEIQSFSKLPKRQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-