Meup028337.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:105771157-105772632[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 4.7e-05 0.0062 18.8 1.8 1 23 10 32 10 32 0.98
2 17 7.6e-06 0.00099 21.3 2.2 1 23 38 60 38 60 0.99
3 17 5.8e-07 7.5e-05 24.8 2.0 1 23 66 88 66 88 0.99
4 17 4.5e-05 0.0059 18.9 0.8 1 19 94 112 94 116 0.95
5 17 5.8e-08 7.6e-06 28.0 2.2 1 23 122 144 122 144 0.99
6 17 6.8e-05 0.0088 18.3 0.5 1 23 150 172 150 172 0.97
7 17 3.9e-05 0.005 19.1 2.9 1 23 182 204 182 204 0.98
8 17 0.0018 0.24 13.8 6.7 1 23 210 232 210 232 0.98
9 17 0.00066 0.087 15.2 6.2 1 23 238 260 238 260 0.99
10 17 2.6e-06 0.00034 22.8 0.5 1 23 266 288 266 288 0.98
11 17 5.3e-05 0.0069 18.7 3.9 1 23 294 316 294 316 0.99
12 17 1.4e-07 1.9e-05 26.7 2.7 1 23 322 344 322 344 0.99
13 17 4.1e-07 5.4e-05 25.3 1.9 1 23 350 372 350 372 0.98
14 17 0.00014 0.018 17.3 2.0 1 23 378 400 378 400 0.98
15 17 9.9e-07 0.00013 24.1 0.5 1 23 406 428 406 428 0.98
16 17 2.4e-06 0.00031 22.9 3.2 1 23 434 456 434 456 0.99
17 17 2.2e-06 0.00028 23.0 3.2 1 23 462 484 462 484 0.99

Sequence Information

Coding Sequence
ATGAGGATACATACTGGtgtaaaaccatttaaatgtcTTACCTGTAATAAAGCATTTTATCAAGGATCAGATTTAAAAAACCATACAAGGTTACATACTGgtgaaaaaccatttaaatgtgATGTCTGCGATAAAGTGTTTtctttatctaaatatttaaaaaatcattcaaaGACACATAGTGAAGTAAggccttataaatgtgatgtaTGTAATAAAGGATTTCATAGTTCATCAAATTTGACAGCACATACAAGGATACACACCGGAGTAAGGCCATTTAAATGTGATATCTGTGATCAATCGTTTTCACATCCTGGTGGTTTAAGAAATCATTTTTGGGTACATTCTGGAGTAAAACCATATAAGTGTAATATCTGTGATAAAACGTTTACCACATCGACAAGTTTAACATCGCATACAAGAATACATACAGGAGAAAAGCCCTTTATATGTAAAATCTGCAATAAAGGGTTTTCTCAAGGACAAGCTTTAAAAAGTCATTCTAGGGTACATAACCCTATTTTTCTTAGGGAAAAACCTTTTACATGTCATATCTGTAATGAAAGCTTTTCTAAATTATCAAGTTTAAATTATCATTCTATAACACATGGCGAAATAAGACCTCATCAATGTAAAATCTGTTATAAAAGATTTTATCATATACCAGATTTAAATAAGCATAAGAAGACACATGGTGATGAAAAGCCATATAAATGTCTTATCTGTGACAAAAGATTTCATCATATGACTAATTTATCACAGCATAAGAGGATACATACTACTACGAAGCCATATAAATGTCAAATCTGCGATCAATCATTTTCTAttgaatcatatttaaaaaagcatataattatacattctGATGAAAAGCCATTCGAATGTCACATATGTAAACAAGCGTTTTCTCATAAAGCAAGAATACAAATCCATATGAGAACACATACCGGCGAAAAGCCCTATAAAtgtaatgtatgtaataaaGCATTTTCGCATTCAgcaaatttaaaatcacatacaAGAATACATACTGGAGAAAAGCCGTTTCGATGCGAGATCTGTGATAAAAGATTTTCTAAAGCTGAGCATTTAACAGTGCATACAAGGATACATACGGGAGATAAACCCTATAAATGTGATACATGTCAACTAGCGTTTGCCCATGCGGCAAATTTCAAAACCCATAAGAAAATACACACCGGAGACAAGTCATTTATATGTGTTATCTGTGACAAAGCGTTTACTCTAGCATCAAATTTATCAAGGCATAAAAGGACACATACTGGTGAAAAGCCTTATGAATGTCATGTATGTAAACAAGCGTTTTCTCATTCAGCAAATTGGAAAACCCATATGAGAATACATACGGGCGAAAAGCCATATAAATGTCATCTCTGTGATGAAGTATTTTCTcgtattgattatttaaaaaagcatACAAACACgcataaaaaaaaagcaaatagCAAATAG
Protein Sequence
MRIHTGVKPFKCLTCNKAFYQGSDLKNHTRLHTGEKPFKCDVCDKVFSLSKYLKNHSKTHSEVRPYKCDVCNKGFHSSSNLTAHTRIHTGVRPFKCDICDQSFSHPGGLRNHFWVHSGVKPYKCNICDKTFTTSTSLTSHTRIHTGEKPFICKICNKGFSQGQALKSHSRVHNPIFLREKPFTCHICNESFSKLSSLNYHSITHGEIRPHQCKICYKRFYHIPDLNKHKKTHGDEKPYKCLICDKRFHHMTNLSQHKRIHTTTKPYKCQICDQSFSIESYLKKHIIIHSDEKPFECHICKQAFSHKARIQIHMRTHTGEKPYKCNVCNKAFSHSANLKSHTRIHTGEKPFRCEICDKRFSKAEHLTVHTRIHTGDKPYKCDTCQLAFAHAANFKTHKKIHTGDKSFICVICDKAFTLASNLSRHKRTHTGEKPYECHVCKQAFSHSANWKTHMRIHTGEKPYKCHLCDEVFSRIDYLKKHTNTHKKKANSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-