Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010000005.1:16749953-16751770[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.0032 0.42 13.0 0.5 2 22 15 35 14 35 0.94

2 21 0.0021 0.28 13.6 1.4 1 23 42 64 42 64 0.98

3 21 9e-07 0.00012 24.2 1.1 2 23 71 92 70 92 0.97

4 21 0.0023 0.3 13.5 2.7 1 23 98 120 98 120 0.99

5 21 1.8e-05 0.0024 20.1 4.9 1 23 126 148 126 148 0.96

6 21 0.0017 0.22 14.0 2.2 1 19 156 174 156 175 0.97

7 21 0.00037 0.048 16.0 7.2 1 23 185 207 185 207 0.99

8 21 3e-06 0.00039 22.6 0.4 1 23 213 235 213 235 0.98

9 21 6.2e-06 0.00082 21.6 6.9 1 23 241 263 241 263 0.98

10 21 5.4e-05 0.007 18.6 4.4 1 23 269 291 269 291 0.99

11 21 0.0012 0.16 14.4 0.6 1 23 297 319 297 319 0.93

12 21 7e-06 0.00092 21.4 3.4 1 23 325 347 325 347 0.98

13 21 3.4e-06 0.00045 22.4 0.4 1 23 353 375 353 375 0.99

14 21 0.00073 0.095 15.1 3.3 1 23 381 404 381 404 0.94

15 21 0.00033 0.043 16.2 0.5 1 23 410 432 410 432 0.98

16 21 1.8e-05 0.0023 20.2 3.6 1 23 438 461 438 461 0.96

17 21 5.5e-06 0.00072 21.8 2.5 1 23 467 489 467 489 0.98

18 21 1e-05 0.0013 20.9 1.3 1 23 495 517 495 517 0.98

19 21 1.5e-06 0.0002 23.5 2.6 1 23 523 545 523 545 0.99

20 21 9e-05 0.012 17.9 2.3 1 23 551 573 551 573 0.98

21 21 7.9e-05 0.01 18.1 1.1 1 23 579 601 579 601 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.0032	0.42	13.0	0.5	2	22	15	35	14	35	0.94
2	21	0.0021	0.28	13.6	1.4	1	23	42	64	42	64	0.98
3	21	9e-07	0.00012	24.2	1.1	2	23	71	92	70	92	0.97
4	21	0.0023	0.3	13.5	2.7	1	23	98	120	98	120	0.99
5	21	1.8e-05	0.0024	20.1	4.9	1	23	126	148	126	148	0.96
6	21	0.0017	0.22	14.0	2.2	1	19	156	174	156	175	0.97
7	21	0.00037	0.048	16.0	7.2	1	23	185	207	185	207	0.99
8	21	3e-06	0.00039	22.6	0.4	1	23	213	235	213	235	0.98
9	21	6.2e-06	0.00082	21.6	6.9	1	23	241	263	241	263	0.98
10	21	5.4e-05	0.007	18.6	4.4	1	23	269	291	269	291	0.99
11	21	0.0012	0.16	14.4	0.6	1	23	297	319	297	319	0.93
12	21	7e-06	0.00092	21.4	3.4	1	23	325	347	325	347	0.98
13	21	3.4e-06	0.00045	22.4	0.4	1	23	353	375	353	375	0.99
14	21	0.00073	0.095	15.1	3.3	1	23	381	404	381	404	0.94
15	21	0.00033	0.043	16.2	0.5	1	23	410	432	410	432	0.98
16	21	1.8e-05	0.0023	20.2	3.6	1	23	438	461	438	461	0.96
17	21	5.5e-06	0.00072	21.8	2.5	1	23	467	489	467	489	0.98
18	21	1e-05	0.0013	20.9	1.3	1	23	495	517	495	517	0.98
19	21	1.5e-06	0.0002	23.5	2.6	1	23	523	545	523	545	0.99
20	21	9e-05	0.012	17.9	2.3	1	23	551	573	551	573	0.98
21	21	7.9e-05	0.01	18.1	1.1	1	23	579	601	579	601	0.97

Sequence Information

Coding Sequence: ATGGATTCGGACAAAAGCTCTAACTTCAAGGAAAAGATGTTAACATGCACATTGTGTCGTGAAGTATTTACAGATAAATTAAGTAGGAGAAGACATATGAGAATATATAGTGGAAAACCCACTTTTACATGtgatatatgtaaaaaattgtttcatgAAAAACCTCAATTGATTActcatattttaaatcatacagGAGACAATTCTCTTAAATGCAGTGTTTGCAATAAGACATTTTCCCGGAAGGGATATGTGAAAATTCATATGAGGGTTCATTCTGGAAATATGCCATATGAGTGTGATATCTGTTATCAAAGATTTTTCTTTAAAGCAACTTTTGACAGTCATATGAGAAAACATACCGGAGTAAAACCTCACAATTGTGATGTATGTAATAAGACATTCGATAATAAAGGACATTTGAAAAGACACAAAATGATTCATAAAAGTAAAAGAGAAAAGCCATTCACTTGCGACATttgtaataattcatattataactattcaCATTTGAAAAGACACGAATGGTTGCATACTACTAAagaaaagccttataaatgtaCCGTctgtaataaaacattttttgaccGTTGCCATTTAAAAGAGCACTCAAGAATTCACACTGGTGAAAAGCCTTATGAATGCACAATATGTAGTAAAAGGTTTACTGTTAATGCAAGTTTGGTACAACATATGATGAGCCATACAGGATTGAAACCTCACAAATGTAAGGAGTGTGACAAGACATTTTGTAATAAAACCAACCTAAAATCACATTTATCAGTCCATACAAGAGAAAAACCATATAAATGTACCATCTgtcataaatcattaaatagTTCAACCACTCTACAATACCATATGATGAAGCATAAAAGCGAAAATCCTCACAGATGTATCGTGTGTAATAAGACATTCCCAATTGCAtcacttttaaaaaaacatatgggCATTCATTCTGCCAACAAGCctcataaatgtaatatatgtgCTAAGACATTTACACAAGCAGTACATTTAAAAGTGCATACAAGGATACATACTGGCGAAAAACCTTACAAATGTGATGTTTGTGATAGATCATTCACTGTATCTACTGCTGTAGTTTCACACATGAGAActcatactggagaaaaaccttTTGAATGCAAAATGTGTGATTATAGTTGTTCAAACTCATCGGGATTAACAATTCATAACAAATACTTTCACTACGGTAAAAAGCCCTTTAAATGTGACATATGTAATAAAGTATTTGTTTTGAAGTCAATTTTGGTTGTACACAAAAAAACTCATACAGGAAATAAACCTTTTGAATGTCACATGTGTTCTAAAACATTTACTCAAAAATCCAGTGTGAGAACCcatattattagttttcatGGTCAATTTAAGCAACATAAATgtaatgtttgtaataattcaTATACTTCAgcatataatttgaaattacatATGAGAATACACACCGGAGAAACTCCTTTTAAATGTGATATATGTGATCAATCATTTCATCAAAAACCACAATTGATTACTCATATTTTAAGTCATACAGGTGAAAAACATTACAAATGTAACATCTGTTCAAAAAGATTTGCTCAAAAATTTACCATGAATATTCATATGAGAACTCATACCGGCGAAAAGCCTTTTAAATGTGATATATGTAATAAAGAAATTCGTCATCAAGCAACTTTCAATATTCACATGAGAAATCATACTGGGTTGAAGCCACACAAGTGTGATATCTGTGATAAAACATTTGCTATAAAATCAAGATTAAATATCCATAGggaaattcataataatatttactga
Protein Sequence: MDSDKSSNFKEKMLTCTLCREVFTDKLSRRRHMRIYSGKPTFTCDICKKLFHEKPQLITHILNHTGDNSLKCSVCNKTFSRKGYVKIHMRVHSGNMPYECDICYQRFFFKATFDSHMRKHTGVKPHNCDVCNKTFDNKGHLKRHKMIHKSKREKPFTCDICNNSYYNYSHLKRHEWLHTTKEKPYKCTVCNKTFFDRCHLKEHSRIHTGEKPYECTICSKRFTVNASLVQHMMSHTGLKPHKCKECDKTFCNKTNLKSHLSVHTREKPYKCTICHKSLNSSTTLQYHMMKHKSENPHRCIVCNKTFPIASLLKKHMGIHSANKPHKCNICAKTFTQAVHLKVHTRIHTGEKPYKCDVCDRSFTVSTAVVSHMRTHTGEKPFECKMCDYSCSNSSGLTIHNKYFHYGKKPFKCDICNKVFVLKSILVVHKKTHTGNKPFECHMCSKTFTQKSSVRTHIISFHGQFKQHKCNVCNNSYTSAYNLKLHMRIHTGETPFKCDICDQSFHQKPQLITHILSHTGEKHYKCNICSKRFAQKFTMNIHMRTHTGEKPFKCDICNKEIRHQATFNIHMRNHTGLKPHKCDICDKTFAIKSRLNIHREIHNNIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019520;
90% Identity: -
80% Identity: -