Meup022430.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:50366763-50368565[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00032 0.042 16.2 3.3 1 23 13 35 13 35 0.98
2 21 0.078 10 8.7 0.2 3 18 43 58 42 63 0.87
3 21 0.00036 0.046 16.1 7.1 1 23 69 91 69 91 0.96
4 21 5.3e-06 0.00069 21.8 0.2 1 23 97 119 97 119 0.99
5 21 1.9e-07 2.5e-05 26.3 1.7 1 23 125 147 125 147 0.99
6 21 1e-07 1.4e-05 27.2 1.6 1 23 153 175 153 175 0.98
7 21 0.00022 0.029 16.7 3.1 1 23 181 203 181 203 0.98
8 21 0.0095 1.2 11.6 2.0 1 23 209 231 209 231 0.98
9 21 4e-07 5.2e-05 25.3 2.4 1 23 237 259 237 259 0.98
10 21 2.5e-07 3.3e-05 26.0 1.1 1 23 265 287 265 287 0.98
11 21 0.00036 0.046 16.1 7.1 1 23 293 315 293 315 0.96
12 21 0.002 0.26 13.7 3.3 1 23 321 343 321 343 0.98
13 21 0.00022 0.029 16.7 3.1 1 23 349 371 349 371 0.98
14 21 0.0095 1.2 11.6 2.0 1 23 377 399 377 399 0.98
15 21 1.4e-07 1.8e-05 26.8 2.0 1 23 405 427 405 427 0.99
16 21 1.8e-06 0.00024 23.3 4.6 1 23 433 455 433 455 0.98
17 21 1.6e-06 0.00021 23.4 6.3 1 23 461 483 461 483 0.98
18 21 7.1e-06 0.00092 21.4 4.8 1 23 489 511 489 511 0.98
19 21 8.1e-06 0.0011 21.2 0.4 1 23 517 539 517 539 0.99
20 21 0.00082 0.11 14.9 7.0 1 23 545 567 545 567 0.99
21 21 0.0013 0.17 14.3 4.9 1 23 573 595 573 595 0.98

Sequence Information

Coding Sequence
atgaaTGACTTAACTGGTTGTCCTGGCAAGAGAAAGTACTCGTGTGAAGTTTGTAATAAATGCTCTACTTATAGAATCAGCTTGACTACACATCAGCTCACGCATAAGACGAAGAAACTTAACCCGTGTGATGTCTGCGACAAATCATTTGCCAAAGGTAGCTCATTGACAAATAATCAACGGACCCACACAGGAAAGAAACCACACgcgtgcgatgtatgtgacatgTCGTTCAGTAAAAGTTGCCATTTGACATCACATCGACGGACCCACACAGGAGAAAAACCATACGtttgcgatgtatgtgacatgTCATTTGCTGAAAATGGCACATTGACGAATCATCGACGGACCCACGCAGGAGAGAAACCATACTCTTGCGATATATGTGACAAATCGTTTACTAAAAGTGGCACATTGACAAGTCATCGACGGACCCACACAGGAGAGAAACCATACGCGTGCGATATATGTGACAAATCGTTTACTAAAAGTAGCACATTGACGAGTCATCGACGGACCCACACAGGAGAGAAACCATACGCGTGCGATATATGTGACAAATCGTTTGCTACAAGTTTCACATTGACGTGTCATAAACGGACCCACACAGGAGAGAAACCATACGCGTGCGATATATGTGACAAACTGTTTGCTACAAGTTTAACATTGACGTGTCATAAACGGACCCACACAGGAGAGAAACCATACTTTTGCGATATATGTGACAAATCGTTTACTAAAAGTGACACATTGACGAGTCATCGACGGACCCACACAGGAGAGAAACCATACGCGTGCGATATATGTGACAAATCGTTTACTAAAAGTGGCACATTGACAAGTCATCGACGGACCCACACAGGAGAGAAACCACACgcgtgcgatgtatgtgacatgTCGTTCAGTAAAAGTTGCCATTTGACATCACATCGACGGACCCACACGGGTGAGAAACCATACTCTTGTGATGTTTGTGACATGTCGTTTGCTACAAGTTTCACATTGACGTGTCATAAACGGACCCACACAGGAGAGAAACCATACGCGTGCGATATATGTGACAAATCGTTTGCTACAAGTTTCACATTGACGTGTCATAAACGGACCCACACAGGAGAGAAACCATACGCGTGCGATATATGTGACAAATTGTTTGCTACAAGTTTAACATTGACGTGTCATAAACGGACCCACACAGGAGAGAAACCATACTCTTGCGATATATGTGACAAATCGTTTACTAAAAGTGACACATTGACGAGTCATCGACGGACCCACACAGGAGAGAAACCATACGCGTGCGATATATGTGACAAATCGTTTGCTACAAGTTGCCATTTGACAACACATCGACGGACCCACACGGGTGAGAAACCATACGCGTGCAATatatgtgacaagtcgttcaCTCAAAGTTGCCATTTGACAACACATCGACGGACCCACACGGGTGAGAAACCATACGCGTGCGATATATGTGACATGTCATTCAGTCAAAGTTGCCATTTGACAACTCATCGACGGACCCACATGGGTGAGAAACCATACTCTTGTGATGTTTGTGACATGTCGTTTGCTGAAAGTGGCACATTGACTACACATCGACGGACCCACACCGGCGAGAAACCATACACATGCCATGTATGCGACAAATCGTTTGCTACAAGTTTCACATTGACGTGTCATAAACGGACCCACACAGGAGAGAAACCATACGCGTGCCATATATGTGACAAATCGTTTGCTACAAGTTTAACATTGACGTGTCATAAACGGACCCACACAGGTGAGAAACCATAA
Protein Sequence
MNDLTGCPGKRKYSCEVCNKCSTYRISLTTHQLTHKTKKLNPCDVCDKSFAKGSSLTNNQRTHTGKKPHACDVCDMSFSKSCHLTSHRRTHTGEKPYVCDVCDMSFAENGTLTNHRRTHAGEKPYSCDICDKSFTKSGTLTSHRRTHTGEKPYACDICDKSFTKSSTLTSHRRTHTGEKPYACDICDKSFATSFTLTCHKRTHTGEKPYACDICDKLFATSLTLTCHKRTHTGEKPYFCDICDKSFTKSDTLTSHRRTHTGEKPYACDICDKSFTKSGTLTSHRRTHTGEKPHACDVCDMSFSKSCHLTSHRRTHTGEKPYSCDVCDMSFATSFTLTCHKRTHTGEKPYACDICDKSFATSFTLTCHKRTHTGEKPYACDICDKLFATSLTLTCHKRTHTGEKPYSCDICDKSFTKSDTLTSHRRTHTGEKPYACDICDKSFATSCHLTTHRRTHTGEKPYACNICDKSFTQSCHLTTHRRTHTGEKPYACDICDMSFSQSCHLTTHRRTHMGEKPYSCDVCDMSFAESGTLTTHRRTHTGEKPYTCHVCDKSFATSFTLTCHKRTHTGEKPYACHICDKSFATSLTLTCHKRTHTGEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-