Meup028447.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:107227908-107229269[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.5e-06 0.00045 22.4 2.3 1 23 6 28 6 28 0.99
2 16 7.4e-08 9.7e-06 27.7 0.6 1 23 34 56 34 56 0.99
3 16 8.3e-09 1.1e-06 30.6 0.9 1 23 62 84 62 84 0.96
4 16 3.9e-06 0.00051 22.2 1.2 1 23 90 112 90 112 0.96
5 16 4.7e-08 6.1e-06 28.3 0.5 1 23 118 140 118 140 0.99
6 16 7.9e-08 1e-05 27.6 0.4 1 23 146 168 146 168 0.99
7 16 3.9e-06 0.00051 22.2 1.2 1 23 174 196 174 196 0.96
8 16 3.7e-07 4.9e-05 25.4 0.6 1 23 202 224 202 224 0.96
9 16 1.4e-07 1.8e-05 26.8 0.4 1 23 230 252 230 252 0.96
10 16 2.6e-05 0.0035 19.6 1.4 1 23 258 280 258 280 0.98
11 16 5.5e-08 7.2e-06 28.0 0.7 1 23 286 308 286 308 0.96
12 16 2.7e-07 3.5e-05 25.9 1.4 1 23 314 336 314 336 0.98
13 16 2.4e-05 0.0032 19.7 0.9 1 23 342 364 342 364 0.97
14 16 1.4e-07 1.8e-05 26.8 0.4 1 23 370 392 370 392 0.96
15 16 4.6e-07 6e-05 25.1 0.6 1 23 398 420 398 420 0.99
16 16 9.8e-07 0.00013 24.1 2.0 1 23 426 448 426 448 0.98

Sequence Information

Coding Sequence
ATGGACAAGAGACAATTTCAATGTGACGTATGcgataaaaagtttaaaaatatcacaaaattaACTGAACACCGGAGGACCCACACAGGTGAGAGACCGTACAAGTGCGATGTTTGCGATAAGTCGTTCGCAAGGAGTTGGAATTTGGTCTTACACCGGAGGACTCACACCGGTGAAAAACCATACTTATGTGATGTGTGTGACAAGTCATTCTCTAATTCTAGCAATTTGACTGTACACCAGAGGACCCACACAGGCGAGAAACCATACTTATGTGATGTGTGTGACAAGTCATTTTCTAATACTGGCACTTTCACTGTACACCGGAGGACCCACACAGGCGAGAAACCGTACACGTGCGATGTGTGTGACAGGTCATTCGCTGATTCTAGCTCTTTAACTGTACACCGGAGGACCCACACAGGCGAGAAACCGTACCCGTGCGATGTGTGTGACAAGTCATTCGCTAATTCTAACACTTTGACTGTACACCAGAGGACCCACACAGGCGAGAAACCATACTTATGTGATGTGTGTGACAAGTCATTTTCTAATACTGGCACTTTCACTGTACACCGGAGGACCCACACAGGCGAGAAACCATACCTATGCGATGTGTGCGACAAGTCATTCGCTAATTCTAACACTTTGACTGTACACCAGAGGACCCACACAGGCGAGAAACCATACTTATGTGATGTGTGCGACAAGTCATTCGCTGATTCTAGCTCATTGACTGTACACCGGAGGACCCACACAGGTGAGAAACCGTACCCGTGCGATGTGTGTGACAAGTCATTCGCTAAGAGTTGTACTTTGATCGGACACAAGAGGActcacactggtgaaaaaccatacctatgcgatgtatgcgacaagtcattcGCTAAATCTAGCAATTTGACTGTACACCAGAGGACCCACACAGGCGAGAAACCATACATATGTGATGTGTGTTACAAGTCATTCTCTAATTCTAGCACTTTGACTGTACACCGGAGGACCCACACAGGCGAGAAACCATACCCGTGCGATGTGTGTGACAAGTCATTCGCTAAGAGTTGTAATTTGATCGAACACAAGGGGActcacactggtgaaaaaccatacctatgcgatgtatgcgacaagtcattcGCTGATTCTAGCTCATTGACTGTACACCGGAGGACCCACACAGGTGAGAAACCGTACCCGTGCGATGTGTGTGACAAGTCATTCGCTAAAACTAGCACTTTGACTGTACACCGGAGGACCCACACAGGCGAGAAACCGTACCCGTGCGATGTGTGTGACCAGTCATTTACCCAAAAAATCCATCTAACTGTACACCGGAGGAAGCACACGGACGTTGATCTTTAA
Protein Sequence
MDKRQFQCDVCDKKFKNITKLTEHRRTHTGERPYKCDVCDKSFARSWNLVLHRRTHTGEKPYLCDVCDKSFSNSSNLTVHQRTHTGEKPYLCDVCDKSFSNTGTFTVHRRTHTGEKPYTCDVCDRSFADSSSLTVHRRTHTGEKPYPCDVCDKSFANSNTLTVHQRTHTGEKPYLCDVCDKSFSNTGTFTVHRRTHTGEKPYLCDVCDKSFANSNTLTVHQRTHTGEKPYLCDVCDKSFADSSSLTVHRRTHTGEKPYPCDVCDKSFAKSCTLIGHKRTHTGEKPYLCDVCDKSFAKSSNLTVHQRTHTGEKPYICDVCYKSFSNSSTLTVHRRTHTGEKPYPCDVCDKSFAKSCNLIEHKGTHTGEKPYLCDVCDKSFADSSSLTVHRRTHTGEKPYPCDVCDKSFAKTSTLTVHRRTHTGEKPYPCDVCDQSFTQKIHLTVHRRKHTDVDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00942001;
90% Identity
-
80% Identity
-