Meup017487.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:22115375-22123865[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 8.8e-06 0.0011 21.1 3.5 1 23 159 181 159 181 0.99
2 18 1.5e-07 2e-05 26.7 0.9 1 23 187 209 187 209 0.99
3 18 2.2e-08 2.8e-06 29.3 2.0 1 23 215 237 215 237 0.99
4 18 2.2e-08 2.8e-06 29.3 2.0 1 23 243 265 243 265 0.99
5 18 1.8e-08 2.3e-06 29.6 3.9 1 23 271 293 271 293 0.99
6 18 2.9e-05 0.0038 19.5 3.8 1 23 299 321 299 321 0.99
7 18 1.3e-05 0.0017 20.6 2.7 2 23 328 349 327 349 0.97
8 18 1.2e-06 0.00016 23.8 1.7 1 23 355 377 355 377 0.99
9 18 9.8e-07 0.00013 24.1 2.3 1 23 383 405 383 405 0.98
10 18 3e-07 4e-05 25.7 1.8 1 23 411 433 411 433 0.99
11 18 1.1e-07 1.4e-05 27.2 7.0 1 23 439 461 439 461 0.99
12 18 4.9e-07 6.5e-05 25.1 3.8 1 23 467 489 467 489 0.99
13 18 5e-07 6.5e-05 25.0 1.6 1 23 495 517 495 517 0.99
14 18 7.4e-06 0.00097 21.4 4.0 1 23 523 545 523 545 0.97
15 18 9.8e-06 0.0013 21.0 0.9 1 23 551 573 551 573 0.98
16 18 9.2e-08 1.2e-05 27.3 1.7 1 23 579 601 579 601 0.99
17 18 1.1e-05 0.0014 20.8 3.9 1 23 607 629 607 629 0.99
18 18 0.00016 0.021 17.2 3.1 1 23 635 657 635 657 0.96

Sequence Information

Coding Sequence
ATGGAACCATTAAGAATAACTACTGATGATTGCGGGATTAATTCAAAgtatcatgatataatacataggtcTAGTATGTTGTCAATCCCATTAATAAAATGTGATGATATTCCTGTTATTAAACAGGAATATATTGATAATCAAGTATTGAATGGAATTGTCAAAGAAGAAATTAATGAAGAAATAGACCATAAAAATGATAGTCGATCATTTCAAATAGgaactaaAACTGAATTGAATGTTGACACCATTGATACCGAAATAAAAACTGAAGTAAATCATATTGAAGGATTTGAATTTAAAGGAGCAGTTTTAAGCGAAAGCAATTCTGCAGAAAACATAACTGGTATGAATTTAGACTTGATATCTAACTGCCTAAATAAAAATCCATTGGGATTAGATAACAACAGTGATAAAATGTCTACAGCATCCAAATTAACAAAGTATACAAGGACATACACAGGTGAAAAGCCGTATAAATGTGATTTTTGTGATAAAGCGTTTTCTAAAAAATcatgtttaattattcatacaatgacacataccggtgaaaagccGTATAAATGTGATGACTGTGATCAATCGTTTTCTCAGAAATCAACTTTAATTATTCATACAATGACacataccggtgaaaagccttataaatgtgatgacTGTGATCAATCGTTTTCTCAGAAATCAACTTTAATAAGGCATACAAGGACACATACGGGtgaaaagccttataaatgtgatgacTGTGATCAATCGTTTTCTCAGAAATCAACTTTAATAAGGCATACAAGGACACATACGGGTGATAAGCCGTTTAAATGTCATATCTGTGATCAATCGTTTTCtcagaaatcaaatttaattagcCATCAAAGGACACATACCGGTGAAAAACCTTATAAATGTGATAACTGTGATCAAGCATTTTCtaagaaatcaaatttaatatgcCATCAAAGGACACATACCGTTGAAAAGCCGTTGAAATGTCATAACTGTGATCAAGCGTTTTCTCTGAAATCAAGTTTAATTAATCATACAAGGACACATACCGGCGAAAAACCTTATAAATGTGATAACTGTGATCAAGCGTTTTctaaaaaatcaagtttaattAATCATACAAAGACACATACCGAtgaaaagccttataaatgtgatgacTGTGATCAATTGTTTTCTCggaaatcaaatttaaagaGGCATAAAGTTACACATACCGGCGAAAAGCCATATAAATGTGATGACTGTGTTCAATCGTTTTCTCAGAAATCAACTTTAATAAGGCATACAAGGACACATACGGGTGATAAGCCGTTTAAATGTCATCACTGTGATCAATCGTTTTCtcagaaatcaaatttaattagcCATCAAAGGACacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAAGCGTTTTCTCAGAAATCAAGTTTAATTAATCATACAAGGACACATACCGGCGAAAAACCTTATAAATGTGATAACTGTGATCAagcattttctaaaaaatcaagtttaattAATCATACAAGGACACACACCGATGAAAAGCCTCATAAATGTGATGACTGTGATCAATTGTTTTCTCggaaatcaaatttaaagaGGCATAAAGTTACACATACCGGcgaaaagccttataaatgtgatgacTGTGATCAAGCGTTTTCTCTGAAATCAAGTTTAATTAATCATACAACTAAACATACGGGTGATAAGCCGTTTAAATGTGATGGTTGTGATCAATCGTTTTCtcagaaatcaaatttaatttatcatacaaggacacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAAGTGTTCTCCtggaaatcaaatttaataaggCATAAAAGGACACATACCGGTGAAAAGACGTATAAATGTGATGACTGTGGTAAAGTTTTTTCTCGGAAATCAATTTTGACATGTCACACAATGACACATACCAGATAA
Protein Sequence
MEPLRITTDDCGINSKYHDIIHRSSMLSIPLIKCDDIPVIKQEYIDNQVLNGIVKEEINEEIDHKNDSRSFQIGTKTELNVDTIDTEIKTEVNHIEGFEFKGAVLSESNSAENITGMNLDLISNCLNKNPLGLDNNSDKMSTASKLTKYTRTYTGEKPYKCDFCDKAFSKKSCLIIHTMTHTGEKPYKCDDCDQSFSQKSTLIIHTMTHTGEKPYKCDDCDQSFSQKSTLIRHTRTHTGEKPYKCDDCDQSFSQKSTLIRHTRTHTGDKPFKCHICDQSFSQKSNLISHQRTHTGEKPYKCDNCDQAFSKKSNLICHQRTHTVEKPLKCHNCDQAFSLKSSLINHTRTHTGEKPYKCDNCDQAFSKKSSLINHTKTHTDEKPYKCDDCDQLFSRKSNLKRHKVTHTGEKPYKCDDCVQSFSQKSTLIRHTRTHTGDKPFKCHHCDQSFSQKSNLISHQRTHTGEKPFKCHNCDQAFSQKSSLINHTRTHTGEKPYKCDNCDQAFSKKSSLINHTRTHTDEKPHKCDDCDQLFSRKSNLKRHKVTHTGEKPYKCDDCDQAFSLKSSLINHTTKHTGDKPFKCDGCDQSFSQKSNLIYHTRTHTGEKPFKCHNCDQVFSWKSNLIRHKRTHTGEKTYKCDDCGKVFSRKSILTCHTMTHTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-