Meup029619.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000003.1:13986945-13992950[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.3e-06 0.00017 23.7 0.9 1 23 92 114 92 114 0.98
2 18 9.3e-05 0.012 17.9 5.2 1 21 120 140 120 141 0.94
3 18 1.4e-05 0.0019 20.5 1.5 1 23 148 170 148 170 0.98
4 18 7.4e-06 0.00097 21.4 2.0 1 23 176 198 176 198 0.96
5 18 2e-06 0.00026 23.1 2.5 1 23 204 226 204 226 0.99
6 18 5.7e-08 7.5e-06 28.0 0.5 1 23 232 254 232 254 0.98
7 18 1.3e-06 0.00017 23.7 0.8 1 23 260 282 260 282 0.99
8 18 2.4e-07 3.2e-05 26.0 0.8 1 23 288 310 288 310 0.99
9 18 2.3e-07 3e-05 26.1 1.1 1 23 316 338 316 338 0.99
10 18 1.5e-07 2e-05 26.7 0.9 1 23 344 366 344 366 0.98
11 18 1.8e-07 2.3e-05 26.5 2.4 1 23 372 394 372 394 0.99
12 18 5.4e-06 0.00071 21.8 3.0 1 23 400 422 400 422 0.97
13 18 7.4e-06 0.00097 21.4 2.0 1 23 428 450 428 450 0.96
14 18 2e-06 0.00026 23.1 2.5 1 23 456 478 456 478 0.99
15 18 5.7e-08 7.5e-06 28.0 0.5 1 23 484 506 484 506 0.98
16 18 1.3e-06 0.00017 23.7 0.8 1 23 512 534 512 534 0.99
17 18 1.5e-07 2e-05 26.7 0.9 1 23 540 562 540 562 0.98
18 18 1.8e-07 2.3e-05 26.5 2.4 1 23 568 590 568 590 0.99

Sequence Information

Coding Sequence
ATGAATGATGTTCAATTTTGTAAATTGCCGTCAAAGGATGGAGCAGGAATAGCAGGCAACCTCATGGTGTCTCAAATGACTGTCTGGGCCCTCGCCCCTGAaactaaaACTGAAGAAAATAGCAGAGTTGACATAAAAGAGGAATTAGATGTGATTGACATTGCTGAATTTAGAGGTAAAGCCATCCAAATCAAACCCTTTGAAAACATAAATCGTATAAATTTGGATTTGACATCAAACAGCTATAGAAGGACACATAACGGAAAAATGAGGTTTGTTTGTAACAGCTGTGATAAAGCTTTTtctaacaaacaaaatttaaatacacatgAAAGGATACATACCGGAGAAAAGTCGTATTCATGTCATAGCTGTGATAAAGTTTTTACTTCTAAACATCATTTAACAAATCATAAATTAACAGATACTGGGGAAAAGCTGTATGAATGTGATAGCTGTAATAAAGTTTTTTCATTCAAACAAAACTTAACAACCCATAGATTGATACATACCGGAGAAAAGCCACATGCTTGTCCAAGCTGTGATAAAGGTTTTTCTAAAAGATCATATTTGATGAAACATTTAATGACACATAATGGTGAAAAGCCATTTAAATGTGAAATATGTGAAAAAGCCTATTCTCGGAAAACACATTTAACAATTCATACAAGAATACATACAGGAGAAAGGCCGTATGCATGTAATGACTGTGATAAAGACTTTTCTGACAAACAATCTTTGATAAGGCATATAAGGACGCATAACGGAGAAAAGCCATTTAAATGTGAAATATGTGATAAAGCCTTTTCTGAGAAAACATATTTAACAATTCATACAAGAATACATACAGGAGAAAGGCCGTATCCATGTAATGACTGTGATAAAGACTTTTTTGACAAACGAAGTTTGATAAGGCATATAAGGACGCATAACGGAGAAAAGCCATTTAAATGTGAAATATGTGATAAAGCCTTTTCTCAGAAAACATATTTAACAATTCATACAAGAATACATACAGGAGAAAGGCCGTATGCATGTAATGACTGTGATAAAGACTTTTTTGACAAACGAAATTTGATAAGGCATATAAGGACGCATAACGGAGAAAAGCCATTTAAATGTGAAATATGTGATAAAGCCTTTTCTCAGAAAACACATTTAACAATTCATACAAGAATACATACAGGAGAAAGGCCGTATGCTTGTGAAGACTgtgataaaaaattttctttcaaacataatttaacaaCCCATAGATTGATACATACCGGAGAAAAGCCACATGCTTGTCCAAGCTGTGATAAAGGTTTTTCTAAAAGATCATATTTGATGAAACATTTAATGACACATAATGGTGAAAAGCCATTTAAATGTGAAATATGTGAAAAAGCCTATTCTCGGAAAACACATTTAACAATTCATACAAGAATACATACAGGAGAAAGGCCGTATGCATGTAATGACTGTGATAAAGACTTTTCTGACAAACAATCTTTGATAAGGCATATAAGGACGCATAACGGAGAAAAGCCATTTAAATGTGAAATATGTGATAAAGCCTTTTCTGAGAAAACATATTTAACAATTCATACAAGAATACATACAGGAGAAAGGCCGTATGCATGTAATGACTGTGATAAAGACTTTTTTGACAAACGAAATTTGATAAGGCATATAAGGACGCATAACGGAGAAAAGCCATTTAAATGTGAAATATGTGATAAAGCCTTTTCTCAGAAAACACATTTAACAATTCATACAAGAATACATACAGGAGAAAGGCCGTATGCTTGTGAAGACTCATTAGGTCGTACAAAAGTAAGTCATCAAAATGCAGTTCATATTCGTATTGGTACAGCTCAAAGTCTTGGCTGTAATGCAAACAACATCGCTATAAATCGCTCAACTATTCGAAGACATAAAGTGATTTTAAGACAAAGAGTTTTCGATGACATAAAAGTATCTTTTAATCCGAATTGTCCTCTAACTGTGCACTGGGACGACAAAATATTAACCGATATTACCGGGAAAGGTCATGTTGATCGTCTTCCTATTTTAGTATCCGGAGACGGAGTAAGTAAGCTTCTCAGTGTTCCAAAGCTTGAATCTGCAACTGGGGAAGAGACGTAA
Protein Sequence
MNDVQFCKLPSKDGAGIAGNLMVSQMTVWALAPETKTEENSRVDIKEELDVIDIAEFRGKAIQIKPFENINRINLDLTSNSYRRTHNGKMRFVCNSCDKAFSNKQNLNTHERIHTGEKSYSCHSCDKVFTSKHHLTNHKLTDTGEKLYECDSCNKVFSFKQNLTTHRLIHTGEKPHACPSCDKGFSKRSYLMKHLMTHNGEKPFKCEICEKAYSRKTHLTIHTRIHTGERPYACNDCDKDFSDKQSLIRHIRTHNGEKPFKCEICDKAFSEKTYLTIHTRIHTGERPYPCNDCDKDFFDKRSLIRHIRTHNGEKPFKCEICDKAFSQKTYLTIHTRIHTGERPYACNDCDKDFFDKRNLIRHIRTHNGEKPFKCEICDKAFSQKTHLTIHTRIHTGERPYACEDCDKKFSFKHNLTTHRLIHTGEKPHACPSCDKGFSKRSYLMKHLMTHNGEKPFKCEICEKAYSRKTHLTIHTRIHTGERPYACNDCDKDFSDKQSLIRHIRTHNGEKPFKCEICDKAFSEKTYLTIHTRIHTGERPYACNDCDKDFFDKRNLIRHIRTHNGEKPFKCEICDKAFSQKTHLTIHTRIHTGERPYACEDSLGRTKVSHQNAVHIRIGTAQSLGCNANNIAINRSTIRRHKVILRQRVFDDIKVSFNPNCPLTVHWDDKILTDITGKGHVDRLPILVSGDGVSKLLSVPKLESATGEET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-