Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010001085.1:3614610-3616331[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.3e-06 0.00017 23.7 1.8 1 23 14 36 14 36 0.98

2 20 1.8e-05 0.0024 20.1 0.8 1 23 42 64 42 64 0.98

3 20 3.4e-07 4.5e-05 25.6 0.5 1 23 70 92 70 92 0.99

4 20 3.3e-07 4.3e-05 25.6 1.3 1 23 98 120 98 120 0.98

5 20 1.7e-05 0.0022 20.2 2.4 1 23 126 148 126 148 0.98

6 20 3.4e-05 0.0044 19.3 3.7 1 23 154 176 154 176 0.98

7 20 7.8e-07 0.0001 24.4 0.4 1 23 182 204 182 204 0.99

8 20 3.3e-07 4.3e-05 25.6 1.3 1 23 210 232 210 232 0.98

9 20 1e-06 0.00013 24.1 3.0 1 23 238 260 238 260 0.98

10 20 8.7e-07 0.00011 24.3 0.8 1 23 266 288 266 288 0.99

11 20 3.3e-07 4.3e-05 25.6 1.3 1 23 294 316 294 316 0.98

12 20 1.7e-05 0.0022 20.2 2.4 1 23 322 344 322 344 0.98

13 20 1.7e-05 0.0023 20.2 5.5 1 23 350 372 350 372 0.98

14 20 4.8e-08 6.2e-06 28.2 0.4 1 23 378 400 378 400 0.99

15 20 3.3e-07 4.3e-05 25.6 1.3 1 23 406 428 406 428 0.98

16 20 1.7e-05 0.0022 20.2 2.4 1 23 434 456 434 456 0.98

17 20 1.7e-05 0.0023 20.2 5.5 1 23 462 484 462 484 0.98

18 20 4.9e-08 6.5e-06 28.2 0.5 1 23 490 512 490 512 0.99

19 20 1.2e-05 0.0015 20.7 1.1 1 23 518 540 518 540 0.98

20 20 0.0012 0.16 14.4 1.4 1 20 546 565 546 568 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.3e-06	0.00017	23.7	1.8	1	23	14	36	14	36	0.98
2	20	1.8e-05	0.0024	20.1	0.8	1	23	42	64	42	64	0.98
3	20	3.4e-07	4.5e-05	25.6	0.5	1	23	70	92	70	92	0.99
4	20	3.3e-07	4.3e-05	25.6	1.3	1	23	98	120	98	120	0.98
5	20	1.7e-05	0.0022	20.2	2.4	1	23	126	148	126	148	0.98
6	20	3.4e-05	0.0044	19.3	3.7	1	23	154	176	154	176	0.98
7	20	7.8e-07	0.0001	24.4	0.4	1	23	182	204	182	204	0.99
8	20	3.3e-07	4.3e-05	25.6	1.3	1	23	210	232	210	232	0.98
9	20	1e-06	0.00013	24.1	3.0	1	23	238	260	238	260	0.98
10	20	8.7e-07	0.00011	24.3	0.8	1	23	266	288	266	288	0.99
11	20	3.3e-07	4.3e-05	25.6	1.3	1	23	294	316	294	316	0.98
12	20	1.7e-05	0.0022	20.2	2.4	1	23	322	344	322	344	0.98
13	20	1.7e-05	0.0023	20.2	5.5	1	23	350	372	350	372	0.98
14	20	4.8e-08	6.2e-06	28.2	0.4	1	23	378	400	378	400	0.99
15	20	3.3e-07	4.3e-05	25.6	1.3	1	23	406	428	406	428	0.98
16	20	1.7e-05	0.0022	20.2	2.4	1	23	434	456	434	456	0.98
17	20	1.7e-05	0.0023	20.2	5.5	1	23	462	484	462	484	0.98
18	20	4.9e-08	6.5e-06	28.2	0.5	1	23	490	512	490	512	0.99
19	20	1.2e-05	0.0015	20.7	1.1	1	23	518	540	518	540	0.98
20	20	0.0012	0.16	14.4	1.4	1	20	546	565	546	568	0.93

Sequence Information

Coding Sequence: ATGAAATATCACCTTCGGACCCACACTGGAGAGAAACCGTACCATTGTGACGCGTGCGACAAATCGTTTACCCAAAGTAGTGATCTGACGGTACACCGGAGAATTCACACAGGAGAGAAACCGTACCAGTGTGACGCGTGCGACAAATCGTTCACCCAAAGTAACCATCTGGCGGGACACTGGAAAATTCACACAGGGGAGAAACCGTACCAGTGTGACGCGTGCGACAAATCGTTCATCCAAAGTAGTGCTCTGACGGTGCACCGACGAACTCATACAGGGGAGAAACCGTACCATTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAGCGCTCTGGCGGTGCACCGGCGAAGTCATACAGGGGAGAAACCGTACCATTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAACCATCTGGCGGGACACTGGAAAATTCACACAGGGGAGAGACCGTACAATTGTGACGTGTGCGAGATGTCGTTCACCCATAGTCACTCACTGACGGTACACCGGAGAATTCACACAGGGGAGAAACCGTACCAGTGTGACGCGTGCGACAAATCGTTCATCCAAAGTAGTGCTCTGACGGTGCACCGACGAAGTCATACAGGAGAGAAACCGTACCATTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAGCGCTCTGGCGGTGCACCGGCGAAGTCATACAGGGGAGAAACCGTACCATTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAACCATCTGGCGGCACACCAGAAAATTCACATAGGGGAGAAACCGTACCAATGTGACGCGTGTGACAAATCGTTCATCCAAAGTAGTACTCTAACAGTGCACCGACGAAGTCATACAGGGGAGAAACCGTACCATTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAGCGCTCTGGCGGTGCACCGGCGAAGTCATACAGGGGAGAAACCGTACCATTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAACCATCTGGCGGGACACTGGAAAATTCACACAGGGGAGAAACCGTACCATTGTGACGTGTGTGGGATGTCGTTCACCCATAGTCACTCACTGACGGTACACCGGAGAATTCACACAGGGGAGAAACCGTACCAGTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAGCGCTCTGGCGGTGCACCGGCGAAGTCATACAGGGGAGAAACCGTACCATTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAGCGCTCTGGCGGTGCACCGGAGAAGTCATACAGGGGAGAAACCGTACCATTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAACCATCTGGCGGGACACTGGAAAATTCACACAGGGGAGAAACCGTACCATTGTGACGTGTGTGGGATGTCGTTCACCCATAGTCACTCACTGACGGTACACCGGAGAATTCACACAGGGGAGAAACCGTACCAGTGTGACGTGTGCGACAAATCGTTCACCCAAAGTAGCACTCTAGCGGTACACCGGAGAATTCACACAGGGGAGAAACCGTACCATTGTGACGTGTGCGAGATGTCGTTCAACCAAAGTAGTGGTCTGACGGTACACCGGCGAGTTCACAAGGGAGAGAAACCGTACCAATGTGAAAGGTGTGGCTTGTGTTTCACTACTGGGATCGATCTTAAGAAGCACTGGTGGACGCATGTAGAAAATATAGAGTGA
Protein Sequence: MKYHLRTHTGEKPYHCDACDKSFTQSSDLTVHRRIHTGEKPYQCDACDKSFTQSNHLAGHWKIHTGEKPYQCDACDKSFIQSSALTVHRRTHTGEKPYHCDVCDKSFTQSSALAVHRRSHTGEKPYHCDVCDKSFTQSNHLAGHWKIHTGERPYNCDVCEMSFTHSHSLTVHRRIHTGEKPYQCDACDKSFIQSSALTVHRRSHTGEKPYHCDVCDKSFTQSSALAVHRRSHTGEKPYHCDVCDKSFTQSNHLAAHQKIHIGEKPYQCDACDKSFIQSSTLTVHRRSHTGEKPYHCDVCDKSFTQSSALAVHRRSHTGEKPYHCDVCDKSFTQSNHLAGHWKIHTGEKPYHCDVCGMSFTHSHSLTVHRRIHTGEKPYQCDVCDKSFTQSSALAVHRRSHTGEKPYHCDVCDKSFTQSSALAVHRRSHTGEKPYHCDVCDKSFTQSNHLAGHWKIHTGEKPYHCDVCGMSFTHSHSLTVHRRIHTGEKPYQCDVCDKSFTQSSTLAVHRRIHTGEKPYHCDVCEMSFNQSSGLTVHRRVHKGEKPYQCERCGLCFTTGIDLKKHWWTHVENIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -