Meup028338.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:105771157-105775290[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 8.3e-06 0.0011 21.2 1.5 1 23 112 134 112 134 0.99
2 23 3.3e-06 0.00043 22.4 0.4 1 23 142 164 142 164 0.97
3 23 4.4e-07 5.8e-05 25.2 1.2 1 23 247 269 247 269 0.99
4 23 1.8e-06 0.00023 23.3 0.5 1 23 277 299 277 299 0.97
5 23 0.00017 0.023 17.1 0.3 1 23 305 327 305 327 0.99
6 23 3.3e-07 4.3e-05 25.6 1.4 1 23 333 355 333 355 0.98
7 23 8.9e-05 0.012 18.0 1.8 1 23 361 383 361 383 0.98
8 23 1.4e-05 0.0019 20.5 2.2 1 23 389 411 389 411 0.99
9 23 1.1e-06 0.00014 24.0 2.0 1 23 417 439 417 439 0.99
10 23 8.4e-05 0.011 18.0 0.8 1 19 445 463 445 467 0.95
11 23 1.1e-07 1.4e-05 27.1 2.2 1 23 473 495 473 495 0.99
12 23 0.00013 0.017 17.5 0.5 1 23 501 523 501 523 0.97
13 23 7.3e-05 0.0095 18.2 2.9 1 23 533 555 533 555 0.98
14 23 0.0035 0.45 12.9 6.7 1 23 561 583 561 583 0.98
15 23 0.0012 0.16 14.3 6.2 1 23 589 611 589 611 0.99
16 23 4.9e-06 0.00064 21.9 0.5 1 23 617 639 617 639 0.98
17 23 0.0001 0.013 17.8 3.9 1 23 645 667 645 667 0.99
18 23 2.7e-07 3.5e-05 25.9 2.7 1 23 673 695 673 695 0.99
19 23 7.7e-07 0.0001 24.4 1.9 1 23 701 723 701 723 0.98
20 23 0.00026 0.035 16.5 2.0 1 23 729 751 729 751 0.98
21 23 1.9e-06 0.00024 23.2 0.5 1 23 757 779 757 779 0.98
22 23 4.4e-06 0.00058 22.1 3.2 1 23 785 807 785 807 0.99
23 23 4.1e-06 0.00053 22.2 3.2 1 23 813 835 813 835 0.99

Sequence Information

Coding Sequence
ATGCAATCGGTAATTTATGGAAAAACCGTGGCACACCTATTGGATACTCGGTTCACTCCAGTGTGCTCTGCACccagtttgaaaaccactgctTTACAatctATATGTAATACTGGAGAAGAAGTAAACGCAATCGAAACCATTATAAAAGTAGAAAAAGATTACATCGAGCGTTTTGAATTTGAAGGAGAAGTGCTCAACAAAAGTCACTCTTCGGAACTCATTGATTCTAACTTAAGGGAAAAACCTTTAACACTCAATGTTTGtaataatgaattttcaaatCTGAGTAAATTTCCCGTTGATAAGATATTACAAAATGGAGATAATCATTACCAATGCAATACCTGTGATCAATTATTTAACTCAAAACCAAATTTGACAAGACACGTAAAGACTCATACCATTAAAAGAGAAGAACCATTCATTTGTGCCATTTGTGATAaatcatataacaataaatcatATTTGAAAATACACATAATGCTTCATAATGGTGAAAAatctATATGTAATACTGAAGAAGAAGTAAACGCAATCGAAACCATTATAAAAGTAGAAAAAGATTACATCGAGCGTTTTGAATTTGAAGGAGAAGTGCTTAAAAAAAGTCACTCTTCGGAACTCATTGATTCTAATTTAAGGGAAAAGCCTTTAACACTCAATGTTTGtaataatgaattttcaaatCTGAGTAAATTTCCCGTTGATAAGATATTACAAAATGGAGATAATCATTACCAATGCAATACCTGTGATCAAGTATTTAACTCAAAACCAAATTTGACTAGACACGTAAAGACTCATACCATTAAAAGACAAGGACCATTCATTTGTGCCATTTGTGATAAATCATATAagaataaatcatatttgaAAATACACATAATGCTTCATAATGGCGAAAAGCCGTATAAATGTGCTATCTGTGATAAAGGGTTTTCTCTTCCGGttattttaaagaaacataCAAGGACACATACCGGAGAAAAGCCACACCAATGTgatatatgtaaaaaaaggtTTAATGTTGCATCAAATTTAACAGTGCATATGAGGATACATACTGGtgtaaaaccatttaaatgtcTTACCTGTAATAAAGCATTTTATCAAGGATCAGATTTAAAAAACCATACAAGGTTACATACTGgtgaaaaaccatttaaatgtgATGTCTGCGATAAAGTGTTTtctttatctaaatatttaaaaaatcattcaaaGACACATAGTGAAGTAAggccttataaatgtgatgtaTGTAATAAAGGATTTCATAGTTCATCAAATTTGACAGCACATACAAGGATACACACCGGAGTAAGGCCATTTAAATGTGATATCTGTGATCAATCGTTTTCACATCCTGGTGGTTTAAGAAATCATTTTTGGGTACATTCTGGAGTAAAACCATATAAGTGTAATATCTGTGATAAAACGTTTACCACATCGACAAGTTTAACATCGCATACAAGAATACATACAGGAGAAAAGCCCTTTATATGTAAAATCTGCAATAAAGGGTTTTCTCAAGGACAAGCTTTAAAAAGTCATTCTAGGGTACATAACCCTATTTTTCTTAGGGAAAAACCTTTTACATGTCATATCTGTAATGAAAGCTTTTCTAAATTATCAAGTTTAAATTATCATTCTATAACACATGGCGAAATAAGACCTCATCAATGTAAAATCTGTTATAAAAGATTTTATCATATACCAGATTTAAATAAGCATAAGAAGACACATGGTGATGAAAAGCCATATAAATGTCTTATCTGTGACAAAAGATTTCATCATATGACTAATTTATCACAGCATAAGAGGATACATACTACTACGAAGCCATATAAATGTCAAATCTGCGATCAATCATTTTCTAttgaatcatatttaaaaaagcatataattatacattctGATGAAAAGCCATTCGAATGTCACATATGTAAACAAGCGTTTTCTCATAAAGCAAGAATACAAATCCATATGAGAACACATACCGGCGAAAAGCCCTATAAAtgtaatgtatgtaataaaGCATTTTCGCATTCAgcaaatttaaaatcacatacaAGAATACATACTGGAGAAAAGCCGTTTCGATGCGAGATCTGTGATAAAAGATTTTCTAAAGCTGAGCATTTAACAGTGCATACAAGGATACATACGGGAGATAAACCCTATAAATGTGATACATGTCAACTAGCGTTTGCCCATGCGGCAAATTTCAAAACCCATAAGAAAATACACACCGGAGACAAGTCATTTATATGTGTTATCTGTGACAAAGCGTTTACTCTAGCATCAAATTTATCAAGGCATAAAAGGACACATACTGGTGAAAAGCCTTATGAATGTCATGTATGTAAACAAGCGTTTTCTCATTCAGCAAATTGGAAAACCCATATGAGAATACATACGGGCGAAAAGCCATATAAATGTCATCTCTGTGATGAAGTATTTTCTcgtattgattatttaaaaaagcatACAAACACgcataaaaaaaaagcaaatagCAAATAG
Protein Sequence
MQSVIYGKTVAHLLDTRFTPVCSAPSLKTTALQSICNTGEEVNAIETIIKVEKDYIERFEFEGEVLNKSHSSELIDSNLREKPLTLNVCNNEFSNLSKFPVDKILQNGDNHYQCNTCDQLFNSKPNLTRHVKTHTIKREEPFICAICDKSYNNKSYLKIHIMLHNGEKSICNTEEEVNAIETIIKVEKDYIERFEFEGEVLKKSHSSELIDSNLREKPLTLNVCNNEFSNLSKFPVDKILQNGDNHYQCNTCDQVFNSKPNLTRHVKTHTIKRQGPFICAICDKSYKNKSYLKIHIMLHNGEKPYKCAICDKGFSLPVILKKHTRTHTGEKPHQCDICKKRFNVASNLTVHMRIHTGVKPFKCLTCNKAFYQGSDLKNHTRLHTGEKPFKCDVCDKVFSLSKYLKNHSKTHSEVRPYKCDVCNKGFHSSSNLTAHTRIHTGVRPFKCDICDQSFSHPGGLRNHFWVHSGVKPYKCNICDKTFTTSTSLTSHTRIHTGEKPFICKICNKGFSQGQALKSHSRVHNPIFLREKPFTCHICNESFSKLSSLNYHSITHGEIRPHQCKICYKRFYHIPDLNKHKKTHGDEKPYKCLICDKRFHHMTNLSQHKRIHTTTKPYKCQICDQSFSIESYLKKHIIIHSDEKPFECHICKQAFSHKARIQIHMRTHTGEKPYKCNVCNKAFSHSANLKSHTRIHTGEKPFRCEICDKRFSKAEHLTVHTRIHTGDKPYKCDTCQLAFAHAANFKTHKKIHTGDKSFICVICDKAFTLASNLSRHKRTHTGEKPYECHVCKQAFSHSANWKTHMRIHTGEKPYKCHLCDEVFSRIDYLKKHTNTHKKKANSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-