Meup022437.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:50454729-50456621[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 4.3e-06 0.00057 22.1 1.3 1 23 13 35 13 35 0.96
2 22 4e-06 0.00052 22.2 0.8 1 23 41 63 41 63 0.98
3 22 1.4e-05 0.0019 20.5 1.6 1 23 69 91 69 91 0.97
4 22 4.9e-08 6.5e-06 28.2 0.9 1 23 97 119 97 119 0.98
5 22 0.0005 0.066 15.6 2.5 1 23 125 147 125 147 0.98
6 22 3.3e-05 0.0043 19.3 0.4 1 23 153 175 153 175 0.98
7 22 3.3e-05 0.0043 19.3 0.4 1 23 181 203 181 203 0.98
8 22 3.3e-05 0.0043 19.3 0.4 1 23 209 231 209 231 0.98
9 22 0.00038 0.049 16.0 0.6 1 23 237 259 237 259 0.98
10 22 5.7e-08 7.4e-06 28.0 0.7 1 23 265 287 265 287 0.99
11 22 4.3e-06 0.00057 22.1 1.3 1 23 293 315 293 315 0.96
12 22 5.5e-07 7.2e-05 24.9 1.7 1 23 321 343 321 343 0.98
13 22 4.9e-08 6.5e-06 28.2 0.9 1 23 349 371 349 371 0.98
14 22 4e-06 0.00052 22.2 0.8 1 23 377 399 377 399 0.98
15 22 1.4e-05 0.0019 20.5 1.6 1 23 405 427 405 427 0.97
16 22 4.9e-08 6.5e-06 28.2 0.9 1 23 433 455 433 455 0.98
17 22 0.0005 0.066 15.6 2.5 1 23 461 483 461 483 0.98
18 22 3.3e-05 0.0043 19.3 0.4 1 23 489 511 489 511 0.98
19 22 3.3e-05 0.0043 19.3 0.4 1 23 517 539 517 539 0.98
20 22 3.3e-05 0.0043 19.3 0.4 1 23 545 567 545 567 0.98
21 22 0.00038 0.049 16.0 0.6 1 23 573 595 573 595 0.98
22 22 2.2e-06 0.00028 23.0 4.5 1 23 601 623 601 623 0.99

Sequence Information

Coding Sequence
ATGGTACACCAGAGAACGCACACTGGTGAGAAATCGTTCCTGTGTGATGTATGTGAAATGTCGTTTACTAAAAAGAGTACTTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGCGATGTGTGCGACAAGCGGTTTAACACTAACTTTGAGATGACGGTCCACCAGAGGATGCACACGGGAGAGAAACCGTTTGCATGTGATGTATGTGTAAAGCGTTTCAACACTAACTCTAAACTGACGTTACACCGTAGGACACATACGGGAGAGAAACCGTTCCCGTGTGATGTGTGTGAAAAGTCGTTCAGTCAAAAGAATAATTTGACAGTCCATCAGAGGACGCACACGGGAGAGAAACCATTCCCATGTGATGTGTGTGAAAAGTGGTTCAGTCAAAGCTGTTATCTAAAGGTTCACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAACACTACCTCTGAGCTGACGGTACACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAACACAACCTCTGAGCTGACGGTTCACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAACACTACCTCTGAGCTGACGGTTCACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAATACTAACTTTGAGATGACTGTCCACCGGAGGACACACACGGGAGAGAAACCATTCCAGTGTGATGTGTGTGAAATTTCGTTCAGTCAAAAGAGTAATTTGATGGTACACCAGAGAACGCACACTGGTGAGAAATCGTTCCTGTGTGATGTATGTGAAATGTCGTTTACTAAAAAGAGTACTTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGCGATGTGTGCGACAAGCGGTTTAACACTAACTCTAAACTGACGTTACACCGTAGGACACATACGGGAGAGAAACCGTTCCCTTGTGATGTGTGTGAAAAGTCGTTCAGTCAAAAGAATAATTTGACAGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGCGATGTGTGCGACAAGCGGTTTAACACTAACTTTGAGATGACGGTCCACCAGAGGATGCACACGGGAGAGAAACCGTTTGCATGTGATGTATGTGTAAAGCGTTTCAACACTAACTCTAAACTGACGTTACACCGTAGGACACATACGGGAGAGAAACCGTTCCCGTGTGATGTGTGTGAAAAGTCGTTCAGTCAAAAGAATAATTTGACAGTCCATCAGAGGACGCACACGGGAGAGAAACCATTCCCATGTGATGTGTGTGAAAAGTGGTTCAGTCAAAGCTGTTATCTAAAGGTTCACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAACACTACCTCTGAGCTGACGGTACACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAACACAACCTCTGAGCTGACGGTTCACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAACACTACCTCTGAGCTGACGGTTCACCGGAGGACACACACGGGAGAGAAACCATTCCCATGCGATGTGTGTGACAAGTGGTTCAACACTAACTTTGAGATGACTGTCCACCGGAGGACACACACGGGAGAGAAACCATTCCAGTGTGATGTGTGTGAAATGTCGTTCAGTCAAAAGAGTCATTTGATGGTACACCATAGAACCCACGGGAGAGAAACCGTTCCAGTGTGA
Protein Sequence
MVHQRTHTGEKSFLCDVCEMSFTKKSTLTVHQRTHTGEKPFPCDVCDKRFNTNFEMTVHQRMHTGEKPFACDVCVKRFNTNSKLTLHRRTHTGEKPFPCDVCEKSFSQKNNLTVHQRTHTGEKPFPCDVCEKWFSQSCYLKVHRRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCDKWFNTNFEMTVHRRTHTGEKPFQCDVCEISFSQKSNLMVHQRTHTGEKSFLCDVCEMSFTKKSTLTVHQRTHTGEKPFPCDVCDKRFNTNSKLTLHRRTHTGEKPFPCDVCEKSFSQKNNLTVHQRTHTGEKPFPCDVCDKRFNTNFEMTVHQRMHTGEKPFACDVCVKRFNTNSKLTLHRRTHTGEKPFPCDVCEKSFSQKNNLTVHQRTHTGEKPFPCDVCEKWFSQSCYLKVHRRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCDKWFNTNFEMTVHRRTHTGEKPFQCDVCEMSFSQKSHLMVHHRTHGRETVPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-