Meup039407.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000004.1:45780985-45787159[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 33 7.5e-06 0.00098 21.3 2.5 1 23 101 123 101 123 0.98
2 33 7.7e-08 1e-05 27.6 0.6 1 23 129 151 129 151 0.99
3 33 6.4e-05 0.0083 18.4 3.5 1 23 157 179 157 179 0.99
4 33 0.00059 0.076 15.4 2.7 1 23 185 207 185 207 0.99
5 33 0.00089 0.12 14.8 3.7 1 23 213 235 213 235 0.99
6 33 0.0014 0.18 14.2 1.4 1 23 241 263 241 263 0.98
7 33 2e-08 2.6e-06 29.4 1.4 1 23 269 291 269 291 0.99
8 33 1e-06 0.00014 24.0 4.9 1 23 297 319 297 319 0.99
9 33 3.7e-07 4.8e-05 25.5 1.7 1 23 325 347 325 347 0.99
10 33 1.5e-05 0.002 20.4 4.1 1 23 353 375 353 375 0.99
11 33 1.1e-07 1.5e-05 27.1 4.7 1 23 381 403 381 403 0.99
12 33 2.1e-07 2.7e-05 26.2 4.9 1 23 409 431 409 431 0.99
13 33 3.1e-06 0.00041 22.5 1.2 1 23 437 459 437 459 0.99
14 33 2e-08 2.6e-06 29.4 1.4 1 23 465 487 465 487 0.99
15 33 1e-06 0.00014 24.0 4.9 1 23 493 515 493 515 0.99
16 33 3.7e-07 4.8e-05 25.5 1.7 1 23 521 543 521 543 0.99
17 33 1.1e-07 1.5e-05 27.1 4.7 1 23 549 571 549 571 0.99
18 33 0.0011 0.14 14.5 3.4 1 23 577 599 577 599 0.99
19 33 1.1e-07 1.5e-05 27.1 4.7 1 23 605 627 605 627 0.99
20 33 2.1e-07 2.7e-05 26.2 4.9 1 23 633 655 633 655 0.99
21 33 3.1e-06 0.00041 22.5 1.2 1 23 661 683 661 683 0.99
22 33 0.0015 0.2 14.1 3.1 1 23 689 711 689 711 0.98
23 33 6e-07 7.9e-05 24.8 5.0 1 23 717 739 717 739 0.99
24 33 3.1e-06 0.00041 22.5 1.2 1 23 745 767 745 767 0.99
25 33 0.0015 0.2 14.1 3.1 1 23 773 795 773 795 0.98
26 33 0.0061 0.79 12.2 3.4 1 23 801 823 801 823 0.98
27 33 2e-08 2.6e-06 29.4 1.4 1 23 829 851 829 851 0.99
28 33 0.0061 0.79 12.2 3.4 1 23 857 879 857 879 0.98
29 33 2e-08 2.6e-06 29.4 1.4 1 23 885 907 885 907 0.99
30 33 1e-06 0.00014 24.0 4.9 1 23 913 935 913 935 0.99
31 33 6.2e-06 0.00081 21.6 1.0 1 23 941 963 941 963 0.99
32 33 2.1e-07 2.7e-05 26.2 5.2 1 23 969 991 969 991 0.99
33 33 3.7e-05 0.0048 19.2 3.1 1 22 997 1018 997 1018 0.96

Sequence Information

Coding Sequence
ATGACGGTCGGCCGTCAGCTAGCCGCCGCGGGTCGAAATGATGTCACTGACAAaactatAACTGAATTGAATGTTGACACAATCGATCCCGAAATAAAAACTgaagtaaattatattgaagGTTTTGAATTTAAAGGAGCAGTTTTAAGCGAAAGCAATTCTGCAGAAAACATAACTGGTATGAATTTAGACTTGATATCTAACTGTCTAAATAAAAATCCATTGGATAACAACTGTGATAAAATGTCCACAGCATCCAAATTAACAAAGTATACAAGGACATACACCGTTGAAAAGCAGTATAAATGTGATTTTTGTGATAAAGCGTTTTctaaaaaatcaagtttaattAATCATACAACTAAACATACAGGTGATAAGCCGTTTAAATGTGATGATTGTGGTAAAGTGTATTCTCGGAAATCAGTTTTAATAACGCATATAAGGACacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAAGCGTTCTCCTGGAAATCAACTTTAATAAGGCATACAAGGACACATACAGGTGATAAGCCGTTTAAATGTCATAACTGTGATCAAGCGTTTTCTctgaaatcaattttaattaatcatacaAGGACACATACGGGTGATAAGCCGTTTAAATGTCATAACTGTGATCAATTGTTTTCTcggaaatcaattttaattgatCATAGAAGGACacataccggtgaaaagccGTTTAAATGTCAAAACTGTGATCAAGCGTTCTCCTGGAAATCAAGTTTAATTAATCATACAACTAAACATACGGGTGATAAGCCGTTTAAATGTGATGGCTGTGATCAGTCGTTTTCtcagaaatcaaatttaataagccatcaaaggacacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAATCGTTTTCTCAGAAATCAACTTTAATTAATCATACAAGGACACATACCGGCGAAAaaccttataaatgtgatgacTGTGATCAATCGTTTTCTCTGAAATCAACTTTAATAAGGCATACAAGGACACATACGGGTGATAAGCCGTTTAAATGTCATAACTGTGATCAATTGTTTTCTCAGAAATCAAGTTTAATTGATCATAGAAGGACacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAGTCGTTTTCtcagaaatcaaatttaataagccatcaaaggacacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCGAGGGTTTTCTCGGAAATCAACTTTAATAAGGCATCAAAGGACACATACCGGTGATAAGCCGTTTAAATGTGATGACTGTGATCAATCGTTTTCTCAGAAATCTATTTTAATAAGCCATCAAAGGACACATACAGGTGATAAGCCGTTTAAATGTGATGGCTGTGATCAGTCGTTTTCtcagaaatcaaatttaataagccatcaaaggacacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAATCGTTTTCTCAGAAATCAACTTTAATTAATCATACAAGGACACATACCGGCGAAAaaccttataaatgtgatgacTGTGATCAATCGTTTTCTCTGAAATCAACTTTAATAAGGCATACAAGGACACATACGGGTGATAAGCCGTTTAAATGTCATAACTGTGATCAGTCGTTTTCtcagaaatcaaatttaataagccatcaaaggacacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAATTGTTTTCTcagaaatcaattttaattgatCATAGAAGGACacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAGTCGTTTTCtcagaaatcaaatttaataagccatcaaaggacacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCGAGGGTTTTCTCGGAAATCAACTTTAATAAGGCATCAAAGGACACATACCGGTGATAAGCCGTTTAAATGTGATGACTGTGATCAATCGTTTTCTCAGAAATCTATTTTAATAAGCCATCAAAGGACacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAAGCGTTCTCCTGGAAATCAAGTTTAATAAATCATACAACTAAACATACAGGTGAAAAGCCGTTTAAATGTCATAACTGTGATCGAGGGTTTTCTCGGAAATCAACTTTAATAAGGCATACAAGGACACATACGGGTGATAAGCCGTTTAAATGTGATGACTGTGATCAATCGTTTTCTCAGAAATCTATTTTAATAAGCCATCAAAGGACacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAAGCGTTCTCCTGGAAATCAAGTTTAATAAATCATACAACTAAACATACAGGTGAAAAGCCGTTTAAATGTCATAACTGTGATCAAGCGTTCTCCTGGAAATCAAgtttaatttatcatacaaCTAAACATACATGTGATAAGCCGTTTAAATGTGATGGCTGTGATCAGTCGTTTTCtcagaaatcaaatttaataagccatcaaaggacacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAAGCGTTCTCCTGGAAATCAAgtttaatttatcatacaaCTAAACATACAGGTGATAAGCCGTTTAAATGTGATGGCTGTGATCAGTCGTTTTCtcagaaatcaaatttaataagccatcaaaggacacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCAATCGTTTTCTCAGAAATCAACTTTAATTAATCATACAAGGACACATACCGGCCAAAaaccttataaatgtgatgacTGTGATCAATCGTTTtctcaaaaatcaattttaattgatCATAGAAGGACacataccggtgaaaagccGTTTAAATGTCATAACTGTGATCGAGTGTTTTCTCGGAAATCAACTTTAATAAGGCATACAAGGACACATACGGGTGATAAGCCGTTTAAATGTCATAACTGTGATCAATTGTTTTCtcagaaatcaaatttaataaggCATAAAAAGACATACCAGTGA
Protein Sequence
MTVGRQLAAAGRNDVTDKTITELNVDTIDPEIKTEVNYIEGFEFKGAVLSESNSAENITGMNLDLISNCLNKNPLDNNCDKMSTASKLTKYTRTYTVEKQYKCDFCDKAFSKKSSLINHTTKHTGDKPFKCDDCGKVYSRKSVLITHIRTHTGEKPFKCHNCDQAFSWKSTLIRHTRTHTGDKPFKCHNCDQAFSLKSILINHTRTHTGDKPFKCHNCDQLFSRKSILIDHRRTHTGEKPFKCQNCDQAFSWKSSLINHTTKHTGDKPFKCDGCDQSFSQKSNLISHQRTHTGEKPFKCHNCDQSFSQKSTLINHTRTHTGEKPYKCDDCDQSFSLKSTLIRHTRTHTGDKPFKCHNCDQLFSQKSSLIDHRRTHTGEKPFKCHNCDQSFSQKSNLISHQRTHTGEKPFKCHNCDRGFSRKSTLIRHQRTHTGDKPFKCDDCDQSFSQKSILISHQRTHTGDKPFKCDGCDQSFSQKSNLISHQRTHTGEKPFKCHNCDQSFSQKSTLINHTRTHTGEKPYKCDDCDQSFSLKSTLIRHTRTHTGDKPFKCHNCDQSFSQKSNLISHQRTHTGEKPFKCHNCDQLFSQKSILIDHRRTHTGEKPFKCHNCDQSFSQKSNLISHQRTHTGEKPFKCHNCDRGFSRKSTLIRHQRTHTGDKPFKCDDCDQSFSQKSILISHQRTHTGEKPFKCHNCDQAFSWKSSLINHTTKHTGEKPFKCHNCDRGFSRKSTLIRHTRTHTGDKPFKCDDCDQSFSQKSILISHQRTHTGEKPFKCHNCDQAFSWKSSLINHTTKHTGEKPFKCHNCDQAFSWKSSLIYHTTKHTCDKPFKCDGCDQSFSQKSNLISHQRTHTGEKPFKCHNCDQAFSWKSSLIYHTTKHTGDKPFKCDGCDQSFSQKSNLISHQRTHTGEKPFKCHNCDQSFSQKSTLINHTRTHTGQKPYKCDDCDQSFSQKSILIDHRRTHTGEKPFKCHNCDRVFSRKSTLIRHTRTHTGDKPFKCHNCDQLFSQKSNLIRHKKTYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-